RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 SEMA6DQ8NFY4 1073 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 XAGE5Q8WWM1 108 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 ANKS1AQ92625 1134 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 GLG1Q92896 1179 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 R3HDM4Q96D70 268 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 AIFM3Q96NN9 605 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 NT5C1BQ96P26 610 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 INO80BQ9C086 356 aaPredicted RBP2.95□□□□□ -1.94
CD44-216ENST00000525293 GLOD4Q9HC38 313 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 NMRK2Q9NPI5 230 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 RNF7Q9UBF6 113 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 GABBR1Q9UBS5 961 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 CCNL1Q9UK58 526 aaPredicted RBP2.95□□□□□ -1.94
CD44-216ENST00000525293 SHOC2Q9UQ13 582 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 MED16Q9Y2X0 877 aa2.95□□□□□ -1.94
CD44-216ENST00000525293 A0A1W2PPL8 197 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 WDR91A4D1P6 747 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 H3BML4 177 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 SMIM22K7EJ46 135 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 TPD52L2O43399 206 aaKnown RBP2.94□□□□□ -1.94
CD44-216ENST00000525293 ONECUT2O95948 504 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 PTMAP06454 111 aaKnown RBP2.94□□□□□ -1.94
CD44-216ENST00000525293 NHLRC4P0CG21 123 aaPredicted RBP2.94□□□□□ -1.94
CD44-216ENST00000525293 KITP10721 976 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 LRPAP1P30533 357 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 ATXN1P54253 815 aaKnown RBP2.94□□□□□ -1.94
CD44-216ENST00000525293 SATB1Q01826 763 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 SLC10A2Q12908 348 aaPredicted RBP2.94□□□□□ -1.94
CD44-216ENST00000525293 MYO1EQ12965 1108 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 CTBP1Q13363 440 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 GTF2H3Q13889 308 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 LLGL1Q15334 1064 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 PROSER3Q2NL68 480 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 ZIK1Q3SY52 487 aaPredicted RBP2.94□□□□□ -1.94
CD44-216ENST00000525293 DEPDC1Q5TB30 811 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 KIAA1614Q5VZ46 1190 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 B3GNT9Q6UX72 402 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 NAPRTQ6XQN6 538 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 PARS2Q7L3T8 475 aaKnown RBP2.94□□□□□ -1.94
CD44-216ENST00000525293 EPM2AIP1Q7L775 607 aaPredicted RBP2.94□□□□□ -1.94
CD44-216ENST00000525293 COL23A1Q86Y22 540 aaPredicted RBP2.94□□□□□ -1.94
CD44-216ENST00000525293 ANKRD13AQ8IZ07 590 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 DNAJC5GQ8N7S2 189 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 VGLL2Q8N8G2 317 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 TBC1D5Q92609 795 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 REPS1Q96D71 796 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 TAAR9Q96RI9 348 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 CDH19Q9H159 772 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 CXorf36Q9H7Y0 433 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 ZMAT3Q9HA38 289 aaKnown RBP2.94□□□□□ -1.94
CD44-216ENST00000525293 ANLNQ9NQW6 1124 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 DUSP22Q9NRW4 184 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 FLRT1Q9NZU1 646 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 ZIM2Q9NZV7 527 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 CAMSAP3Q9P1Y5 1249 aaPredicted RBP2.94□□□□□ -1.94
CD44-216ENST00000525293 SH2B3Q9UQQ2 575 aa2.94□□□□□ -1.94
CD44-216ENST00000525293 BTN3A1O00481 513 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 ERC2O15083 957 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 CTNND1O60716 968 aaKnown RBP2.93□□□□□ -1.94
CD44-216ENST00000525293 RFPL1O75677 317 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 CSF1RP07333 972 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 CYP2D6P10635 497 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 CYP2C9P11712 490 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 XRCC6P12956 609 aaKnown RBP eCLIP2.93□□□□□ -1.94
CD44-216ENST00000525293 NPR1P16066 1061 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 ADORA2AP29274 412 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 MPGP29372 298 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 ZNF81P51508 661 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 EPHB1P54762 984 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 CYP4F2P78329 520 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 KRT17Q04695 432 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 EZH2Q15910 746 aaKnown RBP2.93□□□□□ -1.94
CD44-216ENST00000525293 LY6KQ17RY6 165 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 MGAT5BQ3V5L5 792 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 PRAMEF17Q5VTA0 474 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 LRCH2Q5VUJ6 765 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 LMBRD2Q68DH5 695 aaPredicted RBP2.93□□□□□ -1.94
CD44-216ENST00000525293 NPNTQ6UXI9 565 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 ZNF783Q6ZMS7 281 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 ZNF804AQ7Z570 1209 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 SLC15A3Q8IY34 581 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 RAVER1Q8IY67 606 aaKnown RBP2.93□□□□□ -1.94
CD44-216ENST00000525293 MPP5Q8N3R9 675 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 NME8Q8N427 588 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 ZBTB34Q8NCN2 500 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 OR6B3Q8NGW1 331 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 RAPGEF4Q8WZA2 1011 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 SMG7Q92540 1137 aaKnown RBP2.93□□□□□ -1.94
CD44-216ENST00000525293 ZNF778Q96MU6 729 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 MACROD1Q9BQ69 325 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 MESP1Q9BRJ9 268 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 TRIM54Q9BYV2 358 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 NOB1Q9ULX3 412 aaKnown RBP2.93□□□□□ -1.94
CD44-216ENST00000525293 ADAMTS5Q9UNA0 930 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 RPS6KL1Q9Y6S9 549 aa2.93□□□□□ -1.94
CD44-216ENST00000525293 A0A087WWL8 130 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 TMEM233B4DJY2 109 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 TISP43B9A030 160 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 TBC1D4O60343 1298 aa2.92□□□□□ -1.94
CD44-216ENST00000525293 TUSC2O75896 110 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms