RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 AP1G2O75843 785 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 BEST1O76090 585 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 GLUD1P00367 558 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 FAM200BP0CF97 657 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 NRIP1P48552 1158 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 CCDC173Q0VFZ6 552 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 CLEC20AQ6ZU45 233 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 SMARCD1Q96GM5 515 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 KCNK16Q96T55 309 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 PCDHB18PQ96TA0 734 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 SMOQ99835 787 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 DUSP16Q9BY84 665 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 PDCL3Q9H2J4 239 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 CYP4F11Q9HBI6 524 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 LMCD1Q9NZU5 365 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 ATP8B3O60423 1300 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 TULP2O00295 520 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 SOAT2O75908 522 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 HAPLN1P10915 354 aaPredicted RBP17.22■□□□□ 0.35
LSM1-204ENST00000522515 EPCAMP16422 314 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 FECHP22830 423 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 GTF2F1P35269 517 aaKnown RBP eCLIP17.22■□□□□ 0.35
LSM1-204ENST00000522515 EIF4A3P38919 411 aaKnown RBP17.22■□□□□ 0.35
LSM1-204ENST00000522515 MAGEA11P43364 429 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 BCAT1P54687 386 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 MAP3K7CLP57077 242 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 CDK17Q00537 523 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 PDE4CQ08493 712 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 DUSP6Q16828 381 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 Q7L0L9 218 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 TMEM139Q8IV31 216 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 TCEAL8Q8IYN2 117 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 WDTC1Q8N5D0 677 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 KREMEN2Q8NCW0 462 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 ZMIZ2Q8NF64 920 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 SLC22A17Q8WUG5 538 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 SECISBP2LQ93073 1101 aaKnown RBP17.22■□□□□ 0.35
LSM1-204ENST00000522515 PPP1R9BQ96SB3 815 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 SEPT5Q99719 369 aaPredicted RBP17.22■□□□□ 0.35
LSM1-204ENST00000522515 NSUN3Q9H649 340 aaKnown RBP17.22■□□□□ 0.35
LSM1-204ENST00000522515 CSNK1G1Q9HCP0 422 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 FBXW11Q9UKB1 542 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 HCFC2Q9Y5Z7 792 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 MTCH2Q9Y6C9 303 aa17.22■□□□□ 0.35
LSM1-204ENST00000522515 FAM170AA1A519 330 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 NPR3P17342 541 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 POU3F3P20264 500 aaPredicted RBP17.21■□□□□ 0.35
LSM1-204ENST00000522515 TNFAIP3P21580 790 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 ELF1P32519 619 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 GRIK1P39086 918 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 GPD2P43304 727 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 GPR15P49685 360 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 RBM10P98175 930 aaKnown RBP17.21■□□□□ 0.35
LSM1-204ENST00000522515 BST2Q10589 180 aaKnown RBP17.21■□□□□ 0.35
LSM1-204ENST00000522515 MGAT5BQ3V5L5 792 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 TCEAL5Q5H9L2 206 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 GPR153Q6NV75 609 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 VSTM1Q6UX27 236 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 SCN4BQ8IWT1 228 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 LHX5Q9H2C1 402 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 NHEJ1Q9H9Q4 299 aaPredicted RBP17.21■□□□□ 0.35
LSM1-204ENST00000522515 SEPT11Q9NVA2 429 aaKnown RBP17.21■□□□□ 0.35
LSM1-204ENST00000522515 HSFX1Q9UBD0 423 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 ADAMTS1Q9UHI8 967 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 CYTH4Q9UIA0 394 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 MAFFQ9ULX9 164 aa17.21■□□□□ 0.35
LSM1-204ENST00000522515 SSU72P8A0A1W2PR75 194 aa17.2■□□□□ 0.34
LSM1-204ENST00000522515 F8VP50 259 aa17.2■□□□□ 0.34
LSM1-204ENST00000522515 DDX3XO00571 662 aaKnown RBP eCLIP17.2■□□□□ 0.342e-7■■■■■ 39.2
LSM1-204ENST00000522515 PRRG1O14668 218 aa17.2■□□□□ 0.34
LSM1-204ENST00000522515 C1RP00736 705 aa17.2■□□□□ 0.34
LSM1-204ENST00000522515 CYP1A1P04798 512 aaPredicted RBP17.2■□□□□ 0.34
LSM1-204ENST00000522515 IGFBP4P22692 258 aa17.2■□□□□ 0.34
LSM1-204ENST00000522515 MAPK8IP2Q13387 824 aaPredicted RBP17.2■□□□□ 0.34
LSM1-204ENST00000522515 DDR2Q16832 855 aa17.2■□□□□ 0.34
LSM1-204ENST00000522515 ASTE1Q2TB18 679 aaPredicted RBP17.2■□□□□ 0.34
LSM1-204ENST00000522515 LLGL2Q6P1M3 1020 aa17.2■□□□□ 0.34
LSM1-204ENST00000522515 CYP26C1Q6V0L0 522 aa17.2■□□□□ 0.34
LSM1-204ENST00000522515 LRRC8AQ8IWT6 810 aa17.2■□□□□ 0.34
LSM1-204ENST00000522515 C1orf131Q8NDD1 294 aaKnown RBP17.2■□□□□ 0.34
LSM1-204ENST00000522515 SLC30A5Q8TAD4 765 aa17.2■□□□□ 0.34
LSM1-204ENST00000522515 SLC35F5Q8WV83 523 aa17.2■□□□□ 0.34
LSM1-204ENST00000522515 PPP2R3CQ969Q6 453 aa17.2■□□□□ 0.34
LSM1-204ENST00000522515 BAG1Q99933 345 aaPredicted RBP17.2■□□□□ 0.34
LSM1-204ENST00000522515 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.2■□□□□ 0.34
LSM1-204ENST00000522515 IGFLR1Q9H665 355 aa17.2■□□□□ 0.34
LSM1-204ENST00000522515 DMAP1Q9NPF5 467 aaPredicted RBP17.2■□□□□ 0.34
LSM1-204ENST00000522515 A0A087X0T9 212 aa17.19■□□□□ 0.34
LSM1-204ENST00000522515 PTMAP06454 111 aaKnown RBP17.19■□□□□ 0.34
LSM1-204ENST00000522515 FAM228BP0C875 321 aa17.19■□□□□ 0.34
LSM1-204ENST00000522515 SETSIPP0DME0 302 aa17.19■□□□□ 0.34
LSM1-204ENST00000522515 ATF6P18850 670 aa17.19■□□□□ 0.34
LSM1-204ENST00000522515 CDH5P33151 784 aaPredicted RBP17.19■□□□□ 0.34
LSM1-204ENST00000522515 TUFMP49411 452 aaKnown RBP17.19■□□□□ 0.34
LSM1-204ENST00000522515 NOMO3P69849 1222 aa17.19■□□□□ 0.34
LSM1-204ENST00000522515 HYAL1Q12794 435 aa17.19■□□□□ 0.34
LSM1-204ENST00000522515 KCNC3Q14003 757 aa17.19■□□□□ 0.34
LSM1-204ENST00000522515 SDHAF4Q5VUM1 108 aa17.19■□□□□ 0.34
LSM1-204ENST00000522515 VN1R2Q8NFZ6 395 aa17.19■□□□□ 0.34
LSM1-204ENST00000522515 SLC7A14Q8TBB6 771 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms