RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 ZDHHC17Q8IUH5 632 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 CREBRFQ8IUR6 639 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 ZDHHC14Q8IZN3 488 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 SLC4A11Q8NBS3 891 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 SLC7A14Q8TBB6 771 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 WHAMMQ8TF30 809 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 KCTD13Q8WZ19 329 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 SMG7Q92540 1137 aaKnown RBP8.97□□□□□ -0.97
PDGFC-205ENST00000506880 RABGGTAQ92696 567 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 CYFIP2Q96F07 1278 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 SLITRK1Q96PX8 696 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 SPAG5Q96R06 1193 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 PI4K2AQ9BTU6 479 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 PHF7Q9BWX1 381 aaPredicted RBP8.97□□□□□ -0.97
PDGFC-205ENST00000506880 VPS16Q9H269 839 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 SIX2Q9NPC8 291 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 CRTAC1Q9NQ79 661 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 TAB2Q9NYJ8 693 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 GTF3C4Q9UKN8 822 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 PCDHB4Q9Y5E5 795 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 TIMM13Q9Y5L4 95 aaPredicted RBP8.97□□□□□ -0.97
PDGFC-205ENST00000506880 PRUNE2Q8WUY3 3088 aa8.97□□□□□ -0.97
PDGFC-205ENST00000506880 TTC28Q96AY4 2481 aa8.96□□□□□ -0.97
PDGFC-205ENST00000506880 OBSL1O75147 1896 aa8.96□□□□□ -0.97
PDGFC-205ENST00000506880 F8VZ95 297 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 O00370 1275 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 XPO1O14980 1071 aaKnown RBP8.96□□□□□ -0.98
PDGFC-205ENST00000506880 PER2O15055 1255 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 MBTPS2O43462 519 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 EPCAMP16422 314 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 FERP16591 822 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 SLC9A1P19634 815 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 LMO2P25791 158 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 CDH5P33151 784 aaPredicted RBP8.96□□□□□ -0.98
PDGFC-205ENST00000506880 PBX1P40424 430 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 JAM2P57087 298 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 KCNMA1Q12791 1236 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 DUSP4Q13115 394 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 ZNF268Q14587 947 aaPredicted RBP8.96□□□□□ -0.98
PDGFC-205ENST00000506880 ARID5BQ14865 1188 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 SYCP1Q15431 976 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 SKIV2LQ15477 1246 aaKnown RBP8.96□□□□□ -0.98
PDGFC-205ENST00000506880 TAF12Q16514 161 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 MGAT5BQ3V5L5 792 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 ARHGAP15Q53QZ3 475 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 MDH1BQ5I0G3 518 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 ACBD5Q5T8D3 534 aaPredicted RBP8.96□□□□□ -0.98
PDGFC-205ENST00000506880 SPECC1LQ69YQ0 1117 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 SPOPLQ6IQ16 392 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 DPY19L2P1Q6NXN4 242 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 C1orf228Q6PIY5 440 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 DENND5BQ6ZUT9 1274 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 MTSS1LQ765P7 747 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 ARCQ7LC44 396 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 CACNA2D4Q7Z3S7 1137 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 RBM23Q86U06 439 aaKnown RBP8.96□□□□□ -0.98
PDGFC-205ENST00000506880 FAM35AQ86V20 835 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 LRRTM3Q86VH5 581 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 OSTM1Q86WC4 334 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 PALB2Q86YC2 1186 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 FUKQ8N0W3 1084 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 NUP93Q8N1F7 819 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 RBBP8NLQ8NC74 664 aaPredicted RBP8.96□□□□□ -0.98
PDGFC-205ENST00000506880 STKLD1Q8NE28 680 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 AUTS2Q8WXX7 1259 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 IRGQQ8WZA9 623 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 TATDN2Q93075 761 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 MYLPFQ96A32 169 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 ZNF707Q96C28 371 aaPredicted RBP8.96□□□□□ -0.98
PDGFC-205ENST00000506880 MRFAP1L1Q96HT8 127 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 HEXIM2Q96MH2 286 aaKnown RBP8.96□□□□□ -0.98
PDGFC-205ENST00000506880 KREMEN1Q96MU8 473 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 IRX2Q9BZI1 471 aaPredicted RBP8.96□□□□□ -0.98
PDGFC-205ENST00000506880 GANQ9H2C0 597 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 KIF9Q9HAQ2 790 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 PIDD1Q9HB75 910 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 TRPV4Q9HBA0 871 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 CNGB3Q9NQW8 809 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 ABI2Q9NYB9 513 aaPredicted RBP8.96□□□□□ -0.98
PDGFC-205ENST00000506880 AIPL1Q9NZN9 384 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 IGSF9Q9P2J2 1179 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 EPS15L1Q9UBC2 864 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 DNAJC12Q9UKB3 198 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 POLIQ9UNA4 740 aa8.96□□□□□ -0.98
PDGFC-205ENST00000506880 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.96□□□□□ -0.98
PDGFC-205ENST00000506880 DOCK6Q96HP0 2047 aa8.95□□□□□ -0.98
PDGFC-205ENST00000506880 MYBPHLA2RUH7 354 aa8.95□□□□□ -0.98
PDGFC-205ENST00000506880 ADAM12O43184 909 aa8.95□□□□□ -0.98
PDGFC-205ENST00000506880 GLI1P08151 1106 aa8.95□□□□□ -0.98
PDGFC-205ENST00000506880 PDGFRBP09619 1106 aa8.95□□□□□ -0.98
PDGFC-205ENST00000506880 ATP1A3P13637 1013 aa8.95□□□□□ -0.98
PDGFC-205ENST00000506880 RPL17P18621 184 aaKnown RBP8.95□□□□□ -0.98
PDGFC-205ENST00000506880 KCNA5P22460 613 aa8.95□□□□□ -0.98
PDGFC-205ENST00000506880 GNA15P30679 374 aa8.95□□□□□ -0.98
PDGFC-205ENST00000506880 HNRNPH3P31942 346 aaKnown RBP8.95□□□□□ -0.98
PDGFC-205ENST00000506880 SOX5P35711 763 aa8.95□□□□□ -0.98
PDGFC-205ENST00000506880 GRIK1P39086 918 aa8.95□□□□□ -0.98
PDGFC-205ENST00000506880 PRKCIP41743 596 aa8.95□□□□□ -0.98
PDGFC-205ENST00000506880 MLLT6P55198 1093 aaPredicted RBP8.95□□□□□ -0.98
PDGFC-205ENST00000506880 CDH8P55286 799 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms