RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 VCPIP1Q96JH7 1222 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 B3GALT6Q96L58 329 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 ZNF830Q96NB3 372 aaPredicted RBP7.63□□□□□ -1.19
NUP54-204ENST00000506098 LPIN3Q9BQK8 851 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 DUSP16Q9BY84 665 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 NKX2-4Q9H2Z4 354 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 DEF6Q9H4E7 631 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 CSNK1G1Q9HCP0 422 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 ABCB6Q9NP58 842 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 ALG13Q9NP73 1137 aaKnown RBP7.63□□□□□ -1.19
NUP54-204ENST00000506098 CYLDQ9NQC7 956 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 TLR9Q9NR96 1032 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 MRPL17Q9NRX2 175 aaKnown RBP7.63□□□□□ -1.19
NUP54-204ENST00000506098 KCND1Q9NSA2 647 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 FAM49BQ9NUQ9 324 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 TMLHEQ9NVH6 421 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 HSFX1Q9UBD0 423 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 NAGPAQ9UK23 515 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 TSPAN16Q9UKR8 245 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 INTUQ9ULD6 942 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 MAFFQ9ULX9 164 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.63□□□□□ -1.199e-6■□□□□ 11.3
NUP54-204ENST00000506098 WDR27A2RRH5 827 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 XPO1O14980 1071 aaKnown RBP7.62□□□□□ -1.19
NUP54-204ENST00000506098 PJA2O43164 708 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 VNN2O95498 520 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 CXCL14O95715 111 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 CCDC130P13994 396 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 DNAJB2P25686 324 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 OR1D2P34982 312 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 MAGEA11P43364 429 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 PLA2G4AP47712 749 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 GABRB2P47870 512 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 NDUFV1P49821 464 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 BCAT1P54687 386 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 GSCP56915 257 aaPredicted RBP7.62□□□□□ -1.19
NUP54-204ENST00000506098 KRT83P78385 493 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 ROR1Q01973 937 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 GFPT1Q06210 699 aaPredicted RBP7.62□□□□□ -1.19
NUP54-204ENST00000506098 BST2Q10589 180 aaKnown RBP7.62□□□□□ -1.19
NUP54-204ENST00000506098 PTP4A2Q12974 167 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 GPM6BQ13491 265 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 RAB33AQ14088 237 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 SMC1AQ14683 1233 aaKnown RBP7.62□□□□□ -1.19
NUP54-204ENST00000506098 CCDC142Q17RM4 750 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 GOLGA7BQ2TAP0 167 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 SLC39A12Q504Y0 691 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 PPP2R2DQ66LE6 453 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 DENND1BQ6P3S1 775 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 VSTM1Q6UX27 236 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 ZNF662Q6ZS27 426 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 CLEC20AQ6ZU45 233 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 FAM35AQ86V20 835 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 TTC30AQ86WT1 665 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 PHF13Q86YI8 300 aaPredicted RBP7.62□□□□□ -1.19
NUP54-204ENST00000506098 GPIHBP1Q8IV16 184 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 MRPL43Q8N983 215 aaKnown RBP7.62□□□□□ -1.19
NUP54-204ENST00000506098 TMEM35BQ8NCS4 154 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 ZNF461Q8TAF7 563 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 SPPL2BQ8TCT7 592 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 SLC2A14Q8TDB8 520 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 MYLPFQ96A32 169 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 SMARCD1Q96GM5 515 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 CEP295NLQ96MC4 621 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.62□□□□□ -1.19
NUP54-204ENST00000506098 LMAN2LQ9H0V9 348 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 SLC28A3Q9HAS3 691 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 PNPLA8Q9NP80 782 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 NGRNQ9NPE2 291 aaKnown RBP7.62□□□□□ -1.19
NUP54-204ENST00000506098 SPTLC3Q9NUV7 552 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 GEMIN8Q9NWZ8 242 aaKnown RBP7.62□□□□□ -1.19
NUP54-204ENST00000506098 HESX1Q9UBX0 185 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 AFF4Q9UHB7 1163 aaKnown RBP7.62□□□□□ -1.19
NUP54-204ENST00000506098 CYTH4Q9UIA0 394 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 REXO2Q9Y3B8 237 aaKnown RBP7.62□□□□□ -1.19
NUP54-204ENST00000506098 CEP83Q9Y592 693 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 PCDHB5Q9Y5E4 795 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 ADGRG1Q9Y653 693 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 CDY1Q9Y6F8 540 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 MYO10Q9HD67 2058 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 MIA3Q5JRA6 1907 aa7.62□□□□□ -1.19
NUP54-204ENST00000506098 KIF26AQ9ULI4 1882 aaPredicted RBP7.62□□□□□ -1.19
NUP54-204ENST00000506098 NCANO14594 1321 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 SHROOM3Q8TF72 1996 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 TMEM265A0A087WTH1 108 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 MTMR11A4FU01 709 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 ANKRD62A6NC57 917 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 C2orf71A6NGG8 1288 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 HHLA1C9JL84 531 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 M0QYV0 167 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 CLDN5O00501 218 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 C2CD2LO14523 706 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 GRM6O15303 877 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 ADAM12O43184 909 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 BEST1O76090 585 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 FTLP02792 175 aaPredicted RBP7.61□□□□□ -1.19
NUP54-204ENST00000506098 CNPP09543 421 aaKnown RBP7.61□□□□□ -1.19
NUP54-204ENST00000506098 OR4Q2P0C623 313 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 FAM200BP0CF97 657 aa7.61□□□□□ -1.19
NUP54-204ENST00000506098 CPB1P15086 417 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms