RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 ERFP50548 548 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 NEK3P51956 506 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 ARFIP2P53365 341 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 ARL4CP56559 192 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 PRKCEQ02156 737 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 SLC25A11Q02978 314 aaKnown RBP12.46□□□□□ -0.41
UBE3D-206ENST00000505226 NCOA4Q13772 614 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 MTERF2Q49AM1 385 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 ALYREFQ86V81 257 aaKnown RBP12.46□□□□□ -0.41
UBE3D-206ENST00000505226 JOSD2Q8TAC2 188 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 ZNF526Q8TF50 670 aaPredicted RBP12.46□□□□□ -0.41
UBE3D-206ENST00000505226 TRIM55Q9BYV6 548 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 ZNF395Q9H8N7 513 aaPredicted RBP12.46□□□□□ -0.41
UBE3D-206ENST00000505226 GINM1Q9NU53 330 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 FETUBQ9UGM5 382 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 FBXO40Q9UH90 709 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 CHMP2BQ9UQN3 213 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 AMPD1P23109 780 aa12.46□□□□□ -0.42
UBE3D-206ENST00000505226 CDK16Q00536 496 aa12.46□□□□□ -0.42
UBE3D-206ENST00000505226 FAAP100Q0VG06 881 aa12.46□□□□□ -0.42
UBE3D-206ENST00000505226 BAATQ14032 418 aaPredicted RBP12.46□□□□□ -0.42
UBE3D-206ENST00000505226 SGSM1Q2NKQ1 1148 aa12.46□□□□□ -0.42
UBE3D-206ENST00000505226 VSIG10LQ86VR7 867 aa12.46□□□□□ -0.42
UBE3D-206ENST00000505226 NMUR2Q9GZQ4 415 aa12.46□□□□□ -0.42
UBE3D-206ENST00000505226 PPCSQ9HAB8 311 aa12.46□□□□□ -0.42
UBE3D-206ENST00000505226 SPATS2LQ9NUQ6 558 aaKnown RBP12.46□□□□□ -0.42
UBE3D-206ENST00000505226 CNTN3Q9P232 1028 aa12.46□□□□□ -0.42
UBE3D-206ENST00000505226 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.46□□□□□ -0.42
UBE3D-206ENST00000505226 LPXNO60711 386 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 DNAJC6O75061 913 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 AVILO75366 819 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 PSMG1O95456 288 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 FESP07332 822 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 PYGBP11216 843 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 RTP1P59025 263 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 MXRA7P84157 204 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 LBRQ14739 615 aaKnown RBP12.45□□□□□ -0.42
UBE3D-206ENST00000505226 DLGAP5Q15398 846 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 SEPT7Q16181 437 aaKnown RBP12.45□□□□□ -0.42
UBE3D-206ENST00000505226 GPAT2Q6NUI2 795 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 PRPF39Q86UA1 669 aaKnown RBP12.45□□□□□ -0.42
UBE3D-206ENST00000505226 FAM71DQ8N9W8 422 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 TTC17Q96AE7 1141 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 IFT43Q96FT9 208 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 KRT82Q9NSB4 513 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 STOML1Q9UBI4 398 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 CYTH4Q9UIA0 394 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 TBC1D12O60347 775 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 LRCH4O75427 683 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 NPTXRO95502 500 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 MYL2P10916 166 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 TNFSF9P41273 254 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 HIRAP54198 1017 aaPredicted RBP12.45□□□□□ -0.42
UBE3D-206ENST00000505226 TSNAXIP1Q2TAA8 658 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 KBTBD12Q3ZCT8 623 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 TREML1Q86YW5 311 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 PALM2Q8IXS6 379 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 SCYL3Q8IZE3 742 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 MCPH1Q8NEM0 835 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 MECRQ9BV79 373 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 XPO7Q9UIA9 1087 aaKnown RBP12.45□□□□□ -0.42
UBE3D-206ENST00000505226 TCRBV9S1A1TA0A576 114 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 LMNAP02545 664 aaKnown RBP12.45□□□□□ -0.42
UBE3D-206ENST00000505226 NR3C2P08235 984 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 WEE2P0C1S8 567 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 RARBP10826 455 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 HARSP12081 509 aaKnown RBP12.45□□□□□ -0.42
UBE3D-206ENST00000505226 PHBP35232 272 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 ELK3P41970 407 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 RCN2Q14257 317 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 CIAPIN1Q6FI81 312 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 LRRC74BQ6ZQY2 392 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 TMEM130Q8N3G9 435 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 GMLQ99445 158 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 CGRRF1Q99675 332 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 MSTO1Q9BUK6 570 aa12.45□□□□□ -0.42
UBE3D-206ENST00000505226 ADGRA2Q96PE1 1338 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 KAT6AQ92794 2004 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 A0A0B4J269 797 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 FCHO1O14526 889 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 MT-ND3P03897 115 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 GNAT1P11488 350 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 OCRLQ01968 901 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 SLC34A1Q06495 639 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 PIGHQ14442 188 aaPredicted RBP12.44□□□□□ -0.42
UBE3D-206ENST00000505226 CCDC6Q16204 474 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.44□□□□□ -0.42
UBE3D-206ENST00000505226 NIPA2Q8N8Q9 360 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 SHKBP1Q8TBC3 707 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 TEKT4Q8WW24 435 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 AGTPBP1Q9UPW5 1226 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 PCNTO95613 3336 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 SMAPO00193 183 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 KIF3CO14782 793 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 HNRNPCL1O60812 293 aaKnown RBP12.44□□□□□ -0.42
UBE3D-206ENST00000505226 SMIM24O75264 130 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 C1QAP02745 245 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 CALB1P05937 261 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 ASNSP08243 561 aa12.44□□□□□ -0.42
UBE3D-206ENST00000505226 TBXAS1P24557 533 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms