RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 IFT43Q96FT9 208 aa14.73□□□□□ -0.05
TCOF1-207ENST00000504761 NXF3Q9H4D5 531 aaKnown RBP14.73□□□□□ -0.05
TCOF1-207ENST00000504761 UBN1Q9NPG3 1134 aa14.73□□□□□ -0.05
TCOF1-207ENST00000504761 ARHGAP28Q9P2N2 729 aa14.73□□□□□ -0.05
TCOF1-207ENST00000504761 ITGB4P16144 1822 aa14.73□□□□□ -0.05
TCOF1-207ENST00000504761 LTBP4Q8N2S1 1624 aa14.73□□□□□ -0.05
TCOF1-207ENST00000504761 HSD17B3P37058 310 aa14.73□□□□□ -0.05
TCOF1-207ENST00000504761 MAGEA4P43358 317 aa14.73□□□□□ -0.05
TCOF1-207ENST00000504761 KLHL38Q2WGJ6 581 aa14.73□□□□□ -0.05
TCOF1-207ENST00000504761 NOL9Q5SY16 702 aaKnown RBP14.73□□□□□ -0.05
TCOF1-207ENST00000504761 C12orf29Q8N999 325 aa14.73□□□□□ -0.05
TCOF1-207ENST00000504761 PPTC7Q8NI37 304 aa14.73□□□□□ -0.05
TCOF1-207ENST00000504761 SH3TC2Q8TF17 1288 aa14.73□□□□□ -0.05
TCOF1-207ENST00000504761 MAML1Q92585 1016 aa14.73□□□□□ -0.05
TCOF1-207ENST00000504761 MAML3Q96JK9 1138 aa14.73□□□□□ -0.05
TCOF1-207ENST00000504761 WDCPQ9H6R7 721 aa14.73□□□□□ -0.05
TCOF1-207ENST00000504761 ZC3H7BQ9UGR2 993 aaKnown RBP14.73□□□□□ -0.05
TCOF1-207ENST00000504761 MAFBQ9Y5Q3 323 aaPredicted RBP14.73□□□□□ -0.05
TCOF1-207ENST00000504761 A0A0G2JND7 137 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 ARIH2O95376 493 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 HNRNPH2P55795 449 aaKnown RBP14.72□□□□□ -0.05
TCOF1-207ENST00000504761 ADIGQ0VDE8 80 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 ACCSLQ4AC99 568 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 MFSD7Q6UXD7 560 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 C3orf62Q6ZUJ4 267 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 PALB2Q86YC2 1186 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 EFCAB13Q8IY85 973 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 HDAC11Q96DB2 347 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 TMEM169Q96HH4 297 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 APBA2Q99767 749 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 CCDC195A0A1B0GUA6 201 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 TREHO43280 583 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 YBX3P16989 372 aaKnown RBP eCLIP14.72□□□□□ -0.059e-6■□□□□ 10.4
TCOF1-207ENST00000504761 MARSP56192 900 aaKnown RBP14.72□□□□□ -0.05
TCOF1-207ENST00000504761 PCSK7Q16549 785 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 ANKRD23Q86SG2 305 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 TACO1Q9BSH4 297 aaKnown RBP14.72□□□□□ -0.05
TCOF1-207ENST00000504761 NUDT5Q9UKK9 219 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 PCDHGC5Q9Y5F6 944 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.72□□□□□ -0.05
TCOF1-207ENST00000504761 DNAJB2P25686 324 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 HNRNPH3P31942 346 aaKnown RBP14.72□□□□□ -0.05
TCOF1-207ENST00000504761 ZNF200P98182 395 aaPredicted RBP14.72□□□□□ -0.05
TCOF1-207ENST00000504761 NFIL3Q16649 462 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 OVOS1Q6IE37 1185 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 MFSD14AQ96MC6 490 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 C10orf88Q9H8K7 445 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 PIDD1Q9HB75 910 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 GOLGA2P5Q9HBQ8 144 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 DCTN4Q9UJW0 460 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 TRPV2Q9Y5S1 764 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 LTBP3Q9NS15 1303 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 IRS2Q9Y4H2 1338 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 GPC4O75487 556 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 RARAP10276 462 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 SMPD1P17405 629 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 ZNF235Q14590 738 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 CTXN3Q4LDR2 81 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 ITPRIPL1Q6GPH6 555 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 WDR93Q6P2C0 686 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 ZNF449Q6P9G9 518 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 SPOCD1Q6ZMY3 1216 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 APTXQ7Z2E3 356 aaKnown RBP14.72□□□□□ -0.05
TCOF1-207ENST00000504761 ZFATQ9P243 1243 aa14.72□□□□□ -0.05
TCOF1-207ENST00000504761 E2F8A0AVK6 867 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 MMP3P08254 477 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 FNTAP49354 379 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 CTCFP49711 727 aaPredicted RBP14.71□□□□□ -0.05
TCOF1-207ENST00000504761 BST2Q10589 180 aaKnown RBP14.71□□□□□ -0.05
TCOF1-207ENST00000504761 NBPF20Q3BBV1 942 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 WSCD1Q658N2 575 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 HGSNATQ68CP4 663 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 C11orf63Q6NUN7 778 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 PPM1EQ8WY54 764 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 ABCF3Q9NUQ8 709 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 SAE1Q9UBE0 346 aaPredicted RBP14.71□□□□□ -0.05
TCOF1-207ENST00000504761 UMODL1Q5DID0 1318 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 KITP10721 976 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 ICAM3P32942 547 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 RPL7AP62424 266 aaKnown RBP14.71□□□□□ -0.05
TCOF1-207ENST00000504761 NOGQ13253 232 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 SYDE1Q6ZW31 735 aaPredicted RBP14.71□□□□□ -0.05
TCOF1-207ENST00000504761 RNF135Q8IUD6 432 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 RMDN1Q96DB5 314 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 MYO9BQ13459 2157 aa14.71□□□□□ -0.05
TCOF1-207ENST00000504761 ADSSP30520 456 aa14.71□□□□□ -0.06
TCOF1-207ENST00000504761 CD52P31358 61 aa14.71□□□□□ -0.06
TCOF1-207ENST00000504761 RFC1P35251 1148 aaPredicted RBP14.71□□□□□ -0.06
TCOF1-207ENST00000504761 PLA2G4AP47712 749 aa14.71□□□□□ -0.06
TCOF1-207ENST00000504761 CENPCQ03188 943 aa14.71□□□□□ -0.06
TCOF1-207ENST00000504761 POU5F1BQ06416 359 aa14.71□□□□□ -0.06
TCOF1-207ENST00000504761 ASPHQ12797 758 aa14.71□□□□□ -0.06
TCOF1-207ENST00000504761 CHSY1Q86X52 802 aa14.71□□□□□ -0.06
TCOF1-207ENST00000504761 ELMOD1Q8N336 334 aa14.71□□□□□ -0.06
TCOF1-207ENST00000504761 ATPAF2Q8N5M1 289 aa14.71□□□□□ -0.06
TCOF1-207ENST00000504761 SENP8Q96LD8 212 aa14.71□□□□□ -0.06
TCOF1-207ENST00000504761 TRIM62Q9BVG3 475 aa14.71□□□□□ -0.06
TCOF1-207ENST00000504761 CEP41Q9BYV8 373 aa14.71□□□□□ -0.06
TCOF1-207ENST00000504761 TSR3Q9UJK0 312 aaKnown RBP14.71□□□□□ -0.06
TCOF1-207ENST00000504761 SKIP12755 728 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms