RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 SYT15Q9BQS2 421 aa10.68□□□□□ -0.7
NUP54-203ENST00000504173 XPO4Q9C0E2 1151 aaKnown RBP10.68□□□□□ -0.7
NUP54-203ENST00000504173 DNAI2Q9GZS0 605 aa10.68□□□□□ -0.7
NUP54-203ENST00000504173 ZCWPW1Q9H0M4 648 aa10.68□□□□□ -0.7
NUP54-203ENST00000504173 DPEP3Q9H4B8 488 aa10.68□□□□□ -0.7
NUP54-203ENST00000504173 FAM124BQ9H5Z6 455 aaPredicted RBP10.68□□□□□ -0.7
NUP54-203ENST00000504173 PLCB1Q9NQ66 1216 aa10.68□□□□□ -0.7
NUP54-203ENST00000504173 FAM207AQ9NSI2 230 aaPredicted RBP10.68□□□□□ -0.7
NUP54-203ENST00000504173 HMGXB4Q9UGU5 601 aa10.68□□□□□ -0.7
NUP54-203ENST00000504173 DNAJC12Q9UKB3 198 aa10.68□□□□□ -0.7
NUP54-203ENST00000504173 SIK3Q9Y2K2 1263 aa10.68□□□□□ -0.7
NUP54-203ENST00000504173 NR2E1Q9Y466 385 aa10.68□□□□□ -0.7
NUP54-203ENST00000504173 NME7Q9Y5B8 376 aa10.68□□□□□ -0.7
NUP54-203ENST00000504173 PCDHB4Q9Y5E5 795 aa10.68□□□□□ -0.7
NUP54-203ENST00000504173 R4GN57 208 aa10.68□□□□□ -0.7
NUP54-203ENST00000504173 A0A1W2PQC6 194 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 WDR27A2RRH5 827 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 PI15O43692 258 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 ATP2C2O75185 946 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 CILPO75339 1184 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 KRT5P13647 590 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 UCHL3P15374 230 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 NPR3P17342 541 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 RFX1P22670 979 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 RAPGEF1Q13905 1077 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 UVSSAQ2YD98 709 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 SLC39A12Q504Y0 691 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 ZNF394Q53GI3 561 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 TPGS2Q68CL5 300 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 LLGL2Q6P1M3 1020 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 TMEM270Q6UE05 265 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 ACOT1Q86TX2 421 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 UBR7Q8N806 425 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 SUMF1Q8NBK3 374 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 JAKMIP2Q96AA8 810 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 TNIP3Q96KP6 325 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 PGLYRP2Q96PD5 576 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 TWNKQ96RR1 684 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 NT5C1AQ9BXI3 368 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 S1PR5Q9H228 398 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 GANQ9H2C0 597 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 AJAP1Q9UKB5 411 aaPredicted RBP10.67□□□□□ -0.7
NUP54-203ENST00000504173 CDV3Q9UKY7 258 aaKnown RBP10.67□□□□□ -0.7
NUP54-203ENST00000504173 DAAM1Q9Y4D1 1078 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 FHOD1Q9Y613 1164 aa10.67□□□□□ -0.7
NUP54-203ENST00000504173 MYBPHLA2RUH7 354 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 SPDYE4A6NLX3 237 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 TGM5O43548 720 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 NOL4O94818 638 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 SRGAP2BP0DMP2 458 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 EPCAMP16422 314 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 PTPN1P18031 435 aaKnown RBP10.66□□□□□ -0.7
NUP54-203ENST00000504173 ACO1P21399 889 aaKnown RBP10.66□□□□□ -0.7
NUP54-203ENST00000504173 ELF1P32519 619 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 USP8P40818 1118 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 CLCN4P51793 760 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 CDR1P51861 262 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 POLR2FP61218 127 aaKnown RBP10.66□□□□□ -0.7
NUP54-203ENST00000504173 LMNB2Q03252 620 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 ADCY1Q08828 1119 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 SMARCB1Q12824 385 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 GPR17Q13304 367 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 MAPRE1Q15691 268 aaKnown RBP10.66□□□□□ -0.7
NUP54-203ENST00000504173 NFE2Q16621 373 aaPredicted RBP10.66□□□□□ -0.7
NUP54-203ENST00000504173 CCDC142Q17RM4 750 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 MDH1BQ5I0G3 518 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 LIN9Q5TKA1 542 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 DPY19L2P1Q6NXN4 242 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 ELMSAN1Q6PJG2 1045 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 SARM1Q6SZW1 724 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 TMEM184AQ6ZMB5 413 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 RNF19BQ6ZMZ0 732 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 LRRTM3Q86VH5 581 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 SPATA2LQ8IUW3 424 aaPredicted RBP10.66□□□□□ -0.7
NUP54-203ENST00000504173 B3GALNT2Q8NCR0 500 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 ZNF461Q8TAF7 563 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 MYCBPAPQ8TBZ2 947 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 WHAMMQ8TF30 809 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 SLC22A17Q8WUG5 538 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 MYLPFQ96A32 169 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 TMEM176AQ96HP8 235 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 TRIM5Q9C035 493 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 ELOVL4Q9GZR5 314 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 CRTAC1Q9NQ79 661 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 ABI2Q9NYB9 513 aaPredicted RBP10.66□□□□□ -0.7
NUP54-203ENST00000504173 AFF4Q9UHB7 1163 aaKnown RBP10.66□□□□□ -0.7
NUP54-203ENST00000504173 GTF3C4Q9UKN8 822 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 HCFC2Q9Y5Z7 792 aa10.66□□□□□ -0.7
NUP54-203ENST00000504173 FANCMQ8IYD8 2048 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 DCDC2BA2VCK2 349 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 MTMR11A4FU01 709 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 PRRG1O14668 218 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 EPHB6O15197 1021 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 ABLIM3O94929 683 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 SPATA31D3P0C874 917 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 ATF2P15336 505 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 CD19P15391 556 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 RAD23BP54727 409 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 RBM10P98175 930 aaKnown RBP10.65□□□□□ -0.7
NUP54-203ENST00000504173 CYP27A1Q02318 531 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms