RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 SECISBP2LQ93073 1101 aaKnown RBP12.78□□□□□ -0.36
MED28-203ENST00000503945 SYAP1Q96A49 352 aaPredicted RBP12.78□□□□□ -0.36
MED28-203ENST00000503945 ZFYVE19Q96K21 471 aa12.78□□□□□ -0.36
MED28-203ENST00000503945 CEP295NLQ96MC4 621 aa12.78□□□□□ -0.36
MED28-203ENST00000503945 CNTNAP3BQ96NU0 1288 aa12.78□□□□□ -0.36
MED28-203ENST00000503945 PKMYT1Q99640 499 aa12.78□□□□□ -0.36
MED28-203ENST00000503945 SYT15Q9BQS2 421 aa12.78□□□□□ -0.36
MED28-203ENST00000503945 IER2Q9BTL4 223 aa12.78□□□□□ -0.36
MED28-203ENST00000503945 FAM126AQ9BYI3 521 aaPredicted RBP12.78□□□□□ -0.36
MED28-203ENST00000503945 CNTNAP3Q9BZ76 1288 aa12.78□□□□□ -0.36
MED28-203ENST00000503945 CHRDQ9H2X0 955 aa12.78□□□□□ -0.36
MED28-203ENST00000503945 PARD6AQ9NPB6 346 aa12.78□□□□□ -0.36
MED28-203ENST00000503945 GTSE1Q9NYZ3 720 aa12.78□□□□□ -0.36
MED28-203ENST00000503945 EHD2Q9NZN4 543 aa12.78□□□□□ -0.36
MED28-203ENST00000503945 NXF1Q9UBU9 619 aaKnown RBP12.78□□□□□ -0.36
MED28-203ENST00000503945 ZDHHC9Q9Y397 364 aa12.78□□□□□ -0.36
MED28-203ENST00000503945 PTPRJQ12913 1337 aa12.78□□□□□ -0.36
MED28-203ENST00000503945 SPTBN2O15020 2390 aa12.77□□□□□ -0.36
MED28-203ENST00000503945 DCDC2BA2VCK2 349 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 PRR5-ARHGAP8B1AHC4 643 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 SPECC1L-ADORA2AF8WAN1 911 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 PDXKO00764 312 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 HCRTO43612 131 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 KLRC4O43908 158 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 NOL4O94818 638 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 CLSTN1O94985 981 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 CHRNB1P11230 501 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 SDHBP21912 280 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 BDNFP23560 247 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 ANXA13P27216 316 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 CXCL12P48061 93 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 MYL6P60660 151 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 ARHGAP8P85298 464 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 BIRC3Q13489 604 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 LRRC32Q14392 662 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 LPAL2Q16609 132 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 ITPRIPL2Q3MIP1 535 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 DGKKQ5KSL6 1271 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 KBTBD7Q8WVZ9 684 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 USP13Q92995 863 aaPredicted RBP12.77□□□□□ -0.37
MED28-203ENST00000503945 TRMT2BQ96GJ1 504 aaKnown RBP12.77□□□□□ -0.37
MED28-203ENST00000503945 CCDC34Q96HJ3 373 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 SPATA17Q96L03 361 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 CYP2S1Q96SQ9 504 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 SMG9Q9H0W8 520 aaKnown RBP12.77□□□□□ -0.37
MED28-203ENST00000503945 USP18Q9UMW8 372 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 FRMD4BQ9Y2L6 1034 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 NCANO14594 1321 aa12.77□□□□□ -0.37
MED28-203ENST00000503945 A8MXQ7 604 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 CALUO43852 315 aaPredicted RBP12.76□□□□□ -0.37
MED28-203ENST00000503945 PRAMEF12O95522 483 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 RPN1P04843 607 aaKnown RBP12.76□□□□□ -0.37
MED28-203ENST00000503945 USP17L7P0C7H9 530 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 PTPN1P18031 435 aaKnown RBP12.76□□□□□ -0.37
MED28-203ENST00000503945 HDCP19113 662 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 SOX9P48436 509 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 CCR3P51677 355 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 PSMC1P62191 440 aaKnown RBP12.76□□□□□ -0.37
MED28-203ENST00000503945 RUNX3Q13761 415 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 GAS6Q14393 721 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 SGSM1Q2NKQ1 1148 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 DENND5BQ6ZUT9 1274 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 SLC9A9Q8IVB4 645 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 SYNPOQ8N3V7 929 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 PARD3BQ8TEW8 1205 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 TMEM174Q8WUU8 243 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 FAM83CQ9BQN1 747 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 MRPL45Q9BRJ2 306 aaKnown RBP12.76□□□□□ -0.37
MED28-203ENST00000503945 KIF9Q9HAQ2 790 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 TRPC7Q9HCX4 862 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 CRTAC1Q9NQ79 661 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 DMAC2Q9NW81 257 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 HPSEQ9Y251 543 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 ANK1P16157 1881 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 SCN1AP35498 2009 aa12.76□□□□□ -0.37
MED28-203ENST00000503945 TRAV19A0A0A6YYK7 116 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 A0A1W2PQ27 194 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 A0A1W2PQ64 194 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 A0A1W2PQD8 194 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 IKBKBO14920 756 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 TRIM66O15016 1216 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 KRT37O76014 449 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 STAU1O95793 577 aaKnown RBP12.75□□□□□ -0.37
MED28-203ENST00000503945 C4BPAP04003 597 aaKnown RBP12.75□□□□□ -0.37
MED28-203ENST00000503945 P4HA1P13674 534 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 CTHP32929 405 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 PPP3CCP48454 512 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 CASP4P49662 377 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 PDE6CP51160 858 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 NDUFA8P51970 172 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 CLDN10P78369 228 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 SATB1Q01826 763 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 LMNB2Q03252 620 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 TNK2Q07912 1038 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 SPEM2Q0P670 501 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 ZNF268Q14587 947 aaPredicted RBP12.75□□□□□ -0.37
MED28-203ENST00000503945 ZNF667Q5HYK9 610 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 MDH1BQ5I0G3 518 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 SPEM1Q8N4L4 309 aa12.75□□□□□ -0.37
MED28-203ENST00000503945 KIAA0895Q8NCT3 520 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms