RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 UPF3AQ9H1J1 476 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 NINJ2Q9NZG7 142 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 CCL15-CCL14A0A0B4J2E2 113 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 SPRP35270 261 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 PEX19P40855 299 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 SERPINB4P48594 390 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 HIC1Q14526 733 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 TBCCQ15814 346 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 CCL15Q16663 113 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 SHROOM1Q2M3G4 852 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 KIAA1841Q6NSI8 718 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 STAMBPL1Q96FJ0 436 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 KLF6Q99612 283 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 SIK2Q9H0K1 926 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 LRRC19Q9H756 370 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 KIF3CO14782 793 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 ZBTB22O15209 634 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 SLC4A1P02730 911 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 ENO1P06733 434 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 ACAP1Q15027 740 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 DUPD1Q68J44 220 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 FAM172AQ8WUF8 416 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 CPB2Q96IY4 423 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 MFSD14AQ96MC6 490 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 SPON1Q9HCB6 807 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 BARX2Q9UMQ3 279 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 TRIM49D1C9J1S8 452 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 SETSIPP0DME0 302 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 BCAT1P54687 386 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 GRAMD1BQ3KR37 738 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 SPATA2LQ8IUW3 424 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 SLC7A14Q8TBB6 771 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 ASB7Q9H672 318 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 IGLV3-22A0A075B6J6 115 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 CXCL11O14625 94 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 NQO1P15559 274 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 PCSK1P29120 753 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 RBBP5Q15291 538 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 RGS9BPQ6ZS82 235 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 LRRC6Q86X45 466 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 ZCCHC9Q8N567 271 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 ATPAF2Q8N5M1 289 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 CCNYL1Q8N7R7 359 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 ASAP3Q8TDY4 903 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 CENPKQ9BS16 269 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 EML4Q9HC35 981 aaKnown RBP11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 NUDT17P0C025 328 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 GTF2A2P52657 109 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 OCRLQ01968 901 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 MAMLD1Q13495 774 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 AADACL2Q6P093 401 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 ACOT1Q86TX2 421 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 NT5DC4Q86YG4 428 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 ART4Q93070 314 aa11.21□□□□□ -0.61
LIMCH1-205ENST00000503057 KLHL2O95198 593 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 VTNP04004 478 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 FAM200BP0CF97 657 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 GLRA2P23416 452 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 EPHB1P54762 984 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 KIF19Q2TAC6 998 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 ANO4Q32M45 955 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 FOXR1Q6PIV2 292 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 KIF2BQ8N4N8 673 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 REPS2Q8NFH8 660 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 ACTL9Q8TC94 416 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 ELMO3Q96BJ8 720 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 NSL1Q96IY1 281 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 ZBTB45Q96K62 511 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 AGAP3Q96P47 875 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 NOD2Q9HC29 1040 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 CHST7Q9NS84 486 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 MYH3P11055 1940 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 MYH7P12883 1935 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 ASTN2O75129 1339 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 A0A087WZ62 844 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 RARBP10826 455 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 UGCGQ16739 394 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 LRRC38Q5VT99 294 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 SH3BP5LQ7L8J4 393 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 ZDHHC17Q8IUH5 632 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 SHISA4Q96DD7 197 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 FDXACB1Q9BRP7 624 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 GGA2Q9UJY4 613 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 TIAM2Q8IVF5 1701 aa11.21□□□□□ -0.62
LIMCH1-205ENST00000503057 MYH2Q9UKX2 1941 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 OPLAHO14841 1288 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 TOMM70O94826 608 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 MOCS2O96007 188 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 GRIK1P39086 918 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 MAPRE2Q15555 327 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 ZNF572Q7Z3I7 529 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 RIOX2Q8IUF8 465 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 NDUFAF2Q8N183 169 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 RXFP2Q8WXD0 754 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 EXT2Q93063 718 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 ATXN7L3BQ96GX2 97 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 RXFP1Q9HBX9 757 aa11.2□□□□□ -0.62
LIMCH1-205ENST00000503057 SPATS2LQ9NUQ6 558 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms