RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 DZANK1Q9NVP4 752 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 CLEC1BQ9P126 229 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 HESX1Q9UBX0 185 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 TSPAN16Q9UKR8 245 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 KIAA1257Q9ULG3 409 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 MAFFQ9ULX9 164 aa12.62□□□□□ -0.39
CUX1-210ENST00000497815 SZT2Q5T011 3432 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 CCDC195A0A1B0GUA6 201 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 A0A1W2PQJ5 194 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 FAM170AA1A519 330 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 F8VP50 259 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 M0QYV0 167 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 MED7O43513 233 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 NCK2O43639 380 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 BEST1O76090 585 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 MICAL2O94851 1124 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 C1RP00736 705 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 CFHP08603 1231 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 TPM1P09493 284 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 FAM200BP0CF97 657 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 CYP11B1P15538 503 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 ATF6P18850 670 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 ANXA13P27216 316 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 PDE6CP51160 858 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 MAP3K7CLP57077 242 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 BPIFB4P59827 614 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 GOLGA8FQ08AF8 430 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 GOLGA8DPQ0D2H9 430 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 ASIC2Q16515 512 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 CTC1Q2NKJ3 1217 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 SFMBT2Q5VUG0 894 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 ARHGAP17Q68EM7 881 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 VSTM1Q6UX27 236 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 NOP9Q86U38 636 aaKnown RBP12.61□□□□□ -0.39
CUX1-210ENST00000497815 ZNF397Q8NF99 534 aaPredicted RBP12.61□□□□□ -0.39
CUX1-210ENST00000497815 HDAC7Q8WUI4 952 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 ZNF606Q8WXB4 792 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 KCNK16Q96T55 309 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 EDEM3Q9BZQ6 932 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 PDCL3Q9H2J4 239 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 SFXN1Q9H9B4 322 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 TMEM30AQ9NV96 361 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 CAPN11Q9UMQ6 739 aa12.61□□□□□ -0.39
CUX1-210ENST00000497815 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.61□□□□□ -0.39
CUX1-210ENST00000497815 LUC7L2Q9Y383 392 aaKnown RBP12.61□□□□□ -0.39
CUX1-210ENST00000497815 H3BQ06 376 aaPredicted RBP12.6□□□□□ -0.39
CUX1-210ENST00000497815 FERP16591 822 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 KCNA5P22460 613 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 KRT9P35527 623 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 LTBRP36941 435 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 MAGEA11P43364 429 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 EPHB3P54753 998 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 RPL10AP62906 217 aaKnown RBP12.6□□□□□ -0.39
CUX1-210ENST00000497815 ZBED6P86452 979 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 IFRD2Q12894 506 aaPredicted RBP12.6□□□□□ -0.39
CUX1-210ENST00000497815 PLD1Q13393 1074 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 TRIM14Q14142 442 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 CNGA2Q16280 664 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 DENND1BQ6P3S1 775 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 SYCE2Q6PIF2 218 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 LCLAT1Q6UWP7 414 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 TMEM184AQ6ZMB5 413 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 CLEC20AQ6ZU45 233 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 TTC30AQ86WT1 665 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 PASD1Q8IV76 773 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 ANKRD52Q8NB46 1076 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 SLC20A1Q8WUM9 679 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 IQCDQ96DY2 449 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 SMOQ99835 787 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 PIDD1Q9HB75 910 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 DMAP1Q9NPF5 467 aaPredicted RBP12.6□□□□□ -0.39
CUX1-210ENST00000497815 ZDHHC7Q9NXF8 308 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 HSFX1Q9UBD0 423 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 CDH22Q9UJ99 828 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 MYO6Q9UM54 1294 aa12.6□□□□□ -0.39
CUX1-210ENST00000497815 PRRC2BQ5JSZ5 2229 aaKnown RBP12.6□□□□□ -0.39
CUX1-210ENST00000497815 TULP2O00295 520 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 TRIM66O15016 1216 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 MMEP08473 750 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 HNRNPA1P09651 372 aaKnown RBP eCLIP12.59□□□□□ -0.39
CUX1-210ENST00000497815 SKILP12757 684 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 NPR3P17342 541 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 BCAT1P54687 386 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 ADKP55263 362 aaKnown RBP12.59□□□□□ -0.39
CUX1-210ENST00000497815 SLC8A3P57103 927 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 PDE4CQ08493 712 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 MTMR3Q13615 1198 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 GSE1Q14687 1217 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 COL19A1Q14993 1142 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 VEPH1Q14D04 833 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 STILQ15468 1287 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 TAF12Q16514 161 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 E4F1Q66K89 784 aaPredicted RBP12.59□□□□□ -0.39
CUX1-210ENST00000497815 ELMOD1Q8N336 334 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 SPC24Q8NBT2 197 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 ZMIZ2Q8NF64 920 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 EPS8L1Q8TE68 723 aa12.59□□□□□ -0.39
CUX1-210ENST00000497815 SMG7Q92540 1137 aaKnown RBP12.59□□□□□ -0.39
CUX1-210ENST00000497815 SECISBP2LQ93073 1101 aaKnown RBP12.59□□□□□ -0.39
CUX1-210ENST00000497815 ZNF707Q96C28 371 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms