RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ANKLE1Q8NAG6 615 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 TTC13Q8NBP0 860 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 SLC35B2Q8TB61 432 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 SOCS4Q8WXH5 440 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 ZNF668Q96K58 619 aaPredicted RBP11.31□□□□□ -0.6
USP4-214ENST00000491791 KATNAL1Q9BW62 490 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 NT5C1AQ9BXI3 368 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 SLC4A5Q9BY07 1137 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 TRIM31Q9BZY9 425 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 SMYD3Q9H7B4 428 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 CNOT10Q9H9A5 744 aaKnown RBP11.31□□□□□ -0.6
USP4-214ENST00000491791 PAK6Q9NQU5 681 aaPredicted RBP11.31□□□□□ -0.6
USP4-214ENST00000491791 SETD4Q9NVD3 440 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 GDAP2Q9NXN4 497 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 GGA2Q9UJY4 613 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 ZHX1Q9UKY1 873 aaPredicted RBP11.31□□□□□ -0.6
USP4-214ENST00000491791 R3HDM2Q9Y2K5 976 aaKnown RBP11.31□□□□□ -0.6
USP4-214ENST00000491791 SZT2Q5T011 3432 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 CITO14578 2027 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 KAT6AQ92794 2004 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 SMAPO00193 183 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 DYNC1LI2O43237 492 aaPredicted RBP11.3□□□□□ -0.6
USP4-214ENST00000491791 LRCH4O75427 683 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 AGTP01019 485 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 CD4P01730 458 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 ERBB2P04626 1255 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 RPLP2P05387 115 aaKnown RBP11.3□□□□□ -0.6
USP4-214ENST00000491791 ABHD2P08910 425 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 ATF2P15336 505 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 CD19P15391 556 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 ATF7P17544 494 aaPredicted RBP11.3□□□□□ -0.6
USP4-214ENST00000491791 RGS2P41220 211 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 RAP1GAPP47736 663 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 ZNF143P52747 638 aaPredicted RBP11.3□□□□□ -0.6
USP4-214ENST00000491791 CRYBB1P53674 252 aaPredicted RBP11.3□□□□□ -0.6
USP4-214ENST00000491791 VCPP55072 806 aaKnown RBP11.3□□□□□ -0.6
USP4-214ENST00000491791 SNX16P57768 344 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 PSMC1P62191 440 aaKnown RBP11.3□□□□□ -0.6
USP4-214ENST00000491791 ZNF394Q53GI3 561 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 HIBCHQ6NVY1 386 aaPredicted RBP11.3□□□□□ -0.6
USP4-214ENST00000491791 SCARA5Q6ZMJ2 495 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 BBS12Q6ZW61 710 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 CATSPER4Q7RTX7 472 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 PHLDB2Q86SQ0 1253 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 TMEM110Q86TL2 294 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 TLK2Q86UE8 772 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 CCDC50Q8IVM0 306 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 CRYBG2Q8N1P7 616 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 ALLCQ8N6M5 410 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 BEST2Q8NFU1 509 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 CPXM1Q96SM3 734 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 CNPY3Q9BT09 278 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 CRISPLD2Q9H0B8 497 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.3□□□□□ -0.6
USP4-214ENST00000491791 STMN4Q9H169 189 aaPredicted RBP11.3□□□□□ -0.6
USP4-214ENST00000491791 EPN3Q9H201 632 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 SEMA4AQ9H3S1 761 aa11.3□□□□□ -0.6
USP4-214ENST00000491791 HMX1Q9NP08 348 aaPredicted RBP11.3□□□□□ -0.6
USP4-214ENST00000491791 UBQLN1Q9UMX0 589 aaKnown RBP11.3□□□□□ -0.6
USP4-214ENST00000491791 C2CD4BA6NLJ0 364 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 XPOTO43592 962 aaKnown RBP11.29□□□□□ -0.6
USP4-214ENST00000491791 CSDE1O75534 798 aaKnown RBP11.29□□□□□ -0.6
USP4-214ENST00000491791 GJB6O95452 261 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 TTC4O95801 387 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 KRT1P04264 644 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 PFKMP08237 780 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 GNAT1P11488 350 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 CYP2C9P11712 490 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 TCF4P15884 667 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 PSMA2P25787 234 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 LSP1P33241 339 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 PNPLA4P41247 253 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 ARSEP51690 589 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 NDST1P52848 882 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 YARSP54577 528 aaKnown RBP11.29□□□□□ -0.6
USP4-214ENST00000491791 PPP2R2AP63151 447 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 GNGT1P63211 74 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 SLC29A2Q14542 456 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 SNX17Q15036 470 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 KIZQ2M2Z5 673 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 KRT71Q3SY84 523 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 ATP13A4Q4VNC1 1196 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 UBXN11Q5T124 520 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 C9orf57Q5W0N0 161 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 ZNF365Q70YC5 407 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 DPH6Q7L8W6 267 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 RPAINQ86UA6 219 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 SPATS2Q86XZ4 545 aaKnown RBP11.29□□□□□ -0.6
USP4-214ENST00000491791 ZCCHC9Q8N567 271 aaKnown RBP11.29□□□□□ -0.6
USP4-214ENST00000491791 SH2D3CQ8N5H7 860 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 OR2W6PQ8NHA6 318 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 JOSD2Q8TAC2 188 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 SLC35F5Q8WV83 523 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 TEKT4Q8WW24 435 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 ATG4AQ8WYN0 398 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 RAPGEF5Q92565 580 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 KIF12Q96FN5 646 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 PAWRQ96IZ0 340 aaKnown RBP11.29□□□□□ -0.6
USP4-214ENST00000491791 HEXIM2Q96MH2 286 aaKnown RBP11.29□□□□□ -0.6
USP4-214ENST00000491791 ZMAT2Q96NC0 199 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms