RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 KRTAP5-4Q6L8H1 288 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 TMEM108Q6UXF1 575 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 TSHZ1Q6ZSZ6 1077 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 EPM2AIP1Q7L775 607 aaPredicted RBP2.69□□□□□ -1.98
HMGB1-208ENST00000490788 ARHGEF25Q86VW2 580 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 MYO1HQ8N1T3 1032 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 MPP5Q8N3R9 675 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 Q8NA96 180 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 ZBTB34Q8NCN2 500 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 OR6B3Q8NGW1 331 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 MYCBPAPQ8TBZ2 947 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 ATRIPQ8WXE1 791 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 TFAP2BQ92481 460 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 LPIN2Q92539 896 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 FKBP10Q96AY3 582 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 FAM136AQ96C01 138 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 SLC46A1Q96NT5 459 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 TAAR9Q96RI9 348 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 OSBPL9Q96SU4 736 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 ALG8Q9BVK2 526 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 SMOC2Q9H3U7 446 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 METTL14Q9HCE5 456 aaKnown RBP2.69□□□□□ -1.98
HMGB1-208ENST00000490788 PTGFRNQ9P2B2 879 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 AGAP1Q9UPQ3 857 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 PAXBP1Q9Y5B6 917 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 MSH6P52701 1360 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 A2ML1A8K2U0 1454 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 CFAP74Q9C0B2 1584 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 SHPRHQ149N8 1683 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 ADGBQ8N7X0 1667 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 SCAPERQ9BY12 1400 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 ATP10DQ9P241 1426 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 KDM5DQ9BY66 1539 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 DNMT1P26358 1616 aaKnown RBP2.68□□□□□ -1.98
HMGB1-208ENST00000490788 A0A088AWK7 358 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 CFAP69A5D8W1 941 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 FAM227AF5H4B4 570 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 PHGDHO43175 533 aaKnown RBP2.68□□□□□ -1.98
HMGB1-208ENST00000490788 PROM1O43490 865 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 URI1O94763 535 aaPredicted RBP2.68□□□□□ -1.98
HMGB1-208ENST00000490788 KITP10721 976 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 NDUFB7P17568 137 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 SLC7A1P30825 629 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 GRIA3P42263 894 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 ALDH9A1P49189 494 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 RARRES1P49788 294 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 CACNB3P54284 484 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 CACNA2D1P54289 1103 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 LOXL3P58215 753 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 SIM1P81133 766 aaPredicted RBP2.68□□□□□ -1.98
HMGB1-208ENST00000490788 EIF2B5Q13144 721 aaKnown RBP2.68□□□□□ -1.98
HMGB1-208ENST00000490788 RAB32Q13637 225 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 BMPR2Q13873 1038 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 E2F2Q14209 437 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 TBCCQ15814 346 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 EZH2Q15910 746 aaKnown RBP2.68□□□□□ -1.98
HMGB1-208ENST00000490788 NFE2Q16621 373 aaPredicted RBP2.68□□□□□ -1.98
HMGB1-208ENST00000490788 GFOD2Q3B7J2 385 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 MGAT5BQ3V5L5 792 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 TSTD2Q5T7W7 516 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 ICE2Q659A1 982 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 NXNQ6DKJ4 435 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 CCDC149Q6ZUS6 474 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 RD3Q7Z3Z2 195 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 PEG10Q86TG7 708 aaKnown RBP2.68□□□□□ -1.98
HMGB1-208ENST00000490788 ADGRG3Q86Y34 549 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 WDR75Q8IWA0 830 aaKnown RBP2.68□□□□□ -1.98
HMGB1-208ENST00000490788 TCEAL8Q8IYN2 117 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 MAGEB6Q8N7X4 407 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 BOLLQ8N9W6 283 aaKnown RBP2.68□□□□□ -1.98
HMGB1-208ENST00000490788 SIMC1Q8NDZ2 872 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 PPP1R35Q8TAP8 253 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 ABHD8Q96I13 439 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 SUCLG2Q96I99 432 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 CCDC136Q96JN2 1154 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 PBKQ96KB5 322 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 SYT17Q9BSW7 474 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 SPATA5L1Q9BVQ7 753 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 B3GNT5Q9BYG0 378 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 CPNE5Q9HCH3 593 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 ANLNQ9NQW6 1124 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 KLC4Q9NSK0 619 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 ETAA1Q9NY74 926 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 EHD3Q9NZN3 535 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 XPR1Q9UBH6 696 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 HESX1Q9UBX0 185 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 CCNL1Q9UK58 526 aaPredicted RBP2.68□□□□□ -1.98
HMGB1-208ENST00000490788 THRAP3Q9Y2W1 955 aaKnown RBP2.68□□□□□ -1.98
HMGB1-208ENST00000490788 ATP10BO94823 1461 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 RALGAPBQ86X10 1494 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 IQGAP1P46940 1657 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 ABCC1P33527 1531 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 AGLP35573 1532 aa2.68□□□□□ -1.98
HMGB1-208ENST00000490788 UNC13BO14795 1591 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 PRSS29PA6NIE9 313 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 GCOM1H8Y6P7 765 aaPredicted RBP2.67□□□□□ -1.98
HMGB1-208ENST00000490788 BTN3A1O00481 513 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 TSPAN6O43657 245 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 MGEA5O60502 916 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 TLR5O60602 858 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms