RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 GIPC2Q8TF65 315 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 SHC3Q92529 594 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 PSMG2Q969U7 264 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 ASB2Q96Q27 587 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 CORO1BQ9BR76 489 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 WDR6Q9NNW5 1121 aaKnown RBP11.54□□□□□ -0.56
VPS13D-210ENST00000489961 DMAP1Q9NPF5 467 aaPredicted RBP11.54□□□□□ -0.56
VPS13D-210ENST00000489961 ASAH2Q9NR71 780 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 FAM207AQ9NSI2 230 aaPredicted RBP11.54□□□□□ -0.56
VPS13D-210ENST00000489961 CEP72Q9P209 647 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 CNTN6Q9UQ52 1028 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 SIK3Q9Y2K2 1263 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 FHOD1Q9Y613 1164 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 DENND4AQ7Z401 1863 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 REV3LO60673 3130 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 CLUHO75153 1309 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 A0A1W2PQC6 194 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 F8VP50 259 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 RNF225M0QZC1 329 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-210ENST00000489961 ZNF197O14709 1029 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 TEX33O43247 280 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 FGF19O95750 216 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 TPM3P06753 285 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 RHOP08100 348 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 IL9P15248 144 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 GPR15P49685 360 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 KLK7P49862 253 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 ZNF132P52740 706 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 SLC8A3P57103 927 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 POLR2FP61218 127 aaKnown RBP11.53□□□□□ -0.56
VPS13D-210ENST00000489961 DRAP1Q14919 205 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-210ENST00000489961 NR1I3Q14994 352 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 STILQ15468 1287 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 DPY19L2P1Q6NXN4 242 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 PAQR9Q6ZVX9 377 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 PDZD4Q76G19 769 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-210ENST00000489961 DNAJB7Q7Z6W7 309 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-210ENST00000489961 FEZF2Q8TBJ5 459 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 SPATA17Q96L03 361 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 C8orf48Q96LL4 319 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 NAP1L5Q96NT1 182 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-210ENST00000489961 PHF7Q9BWX1 381 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-210ENST00000489961 STK33Q9BYT3 514 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 GANQ9H2C0 597 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 POMKQ9H5K3 350 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 KRT82Q9NSB4 513 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 HCFC1R1Q9NWW0 138 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 EHD2Q9NZN4 543 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 DNMT3BQ9UBC3 853 aaKnown RBP11.53□□□□□ -0.56
VPS13D-210ENST00000489961 HESX1Q9UBX0 185 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 CDH22Q9UJ99 828 aa11.53□□□□□ -0.56
VPS13D-210ENST00000489961 AJAP1Q9UKB5 411 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-210ENST00000489961 SLC38A8A6NNN8 435 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 CBFA2T2O43439 604 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 MED7O43513 233 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 NOL4O94818 638 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 MYL4P12829 197 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 NPR3P17342 541 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 FSHRP23945 695 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 CACNA2D1P54289 1103 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 EPHA5P54756 1037 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 MAP3K7CLP57077 242 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 NTHL1P78549 312 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 PTK2Q05397 1052 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 GOLGA7BQ2TAP0 167 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 SDHAF4Q5VUM1 108 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 DENND5BQ6ZUT9 1274 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 CACNA2D4Q7Z3S7 1137 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 HS6ST3Q8IZP7 471 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 GPR152Q8TDT2 470 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 GCNAQ96QF7 691 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 SPAG5Q96R06 1193 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 NAA15Q9BXJ9 866 aaKnown RBP11.52□□□□□ -0.57
VPS13D-210ENST00000489961 CSNK1G1Q9HCP0 422 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 NLRC4Q9NPP4 1024 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 AVENQ9NQS1 362 aaPredicted RBP11.52□□□□□ -0.57
VPS13D-210ENST00000489961 IFNKQ9P0W0 207 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 UXTQ9UBK9 157 aaPredicted RBP11.52□□□□□ -0.57
VPS13D-210ENST00000489961 PRKAG3Q9UGI9 489 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 TSPAN16Q9UKR8 245 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 MAGED2Q9UNF1 606 aaPredicted RBP11.52□□□□□ -0.57
VPS13D-210ENST00000489961 MRPS23Q9Y3D9 190 aaKnown RBP11.52□□□□□ -0.57
VPS13D-210ENST00000489961 GREB1Q4ZG55 1949 aa11.52□□□□□ -0.57
VPS13D-210ENST00000489961 PATJQ8NI35 1801 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 F8VZ95 297 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 O00370 1275 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 FOXN3O00409 490 aaPredicted RBP11.51□□□□□ -0.57
VPS13D-210ENST00000489961 THAP12O43422 761 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 RTN3O95197 1032 aaPredicted RBP11.51□□□□□ -0.57
VPS13D-210ENST00000489961 BMP1P13497 986 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 BRD2P25440 801 aaKnown RBP11.51□□□□□ -0.57
VPS13D-210ENST00000489961 GNA15P30679 374 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 BCAT1P54687 386 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 BPIFB4P59827 614 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 MTMR3Q13615 1198 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 CNGA2Q16280 664 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 TJAP1Q5JTD0 557 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 LCLAT1Q6UWP7 414 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 CLEC20AQ6ZU45 233 aa11.51□□□□□ -0.57
VPS13D-210ENST00000489961 GET4Q7L5D6 327 aaPredicted RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms