RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 SGCZQ96LD1 299 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 CCDC138Q96M89 665 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 ZSCAN32Q9NX65 697 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 MYO1AQ9UBC5 1043 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 MID2Q9UJV3 735 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 SERTAD3Q9UJW9 196 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 CAPN11Q9UMQ6 739 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 VWC2LB2RUY7 222 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 H7C4K7 107 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 MPPED1O15442 326 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 NCK2O43639 380 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 RRP9O43818 475 aaKnown RBP6.46□□□□□ -1.38
USP48-209ENST00000487880 A1BGP04217 495 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 FGFR2P21802 821 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 IL1R2P27930 398 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 MPLP40238 635 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 FOLR3P41439 243 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 RHBDL3P58872 404 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 ARHGEF7Q14155 803 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 E2F2Q14209 437 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 PTPRRQ15256 657 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 TSHZ1Q6ZSZ6 1077 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 SRLQ86TD4 932 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 DTX2Q86UW9 622 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 LDLRAD3Q86YD5 345 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 YAF2Q8IY57 180 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 SLC44A3Q8N4M1 653 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 CCDC33Q8N5R6 958 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 SAMD3Q8N6K7 520 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 DEPTORQ8TB45 409 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 IPCEF1Q8WWN9 437 aaPredicted RBP6.46□□□□□ -1.38
USP48-209ENST00000487880 BRI3BPQ8WY22 251 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 TNIP3Q96KP6 325 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 CYP4F11Q9HBI6 524 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 NLRC4Q9NPP4 1024 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 ITGB1BP2Q9UKP3 347 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 HDAC9Q9UKV0 1011 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 ADGRA2Q96PE1 1338 aa6.46□□□□□ -1.38
USP48-209ENST00000487880 APOL1O14791 398 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 PPM1DO15297 605 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 THAP12O43422 761 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 PEX1O43933 1283 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 FGF18O76093 207 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 INMTO95050 263 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 RHOP08100 348 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 BTF3P20290 206 aaKnown RBP6.45□□□□□ -1.38
USP48-209ENST00000487880 SERPINB3P29508 390 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 ADRA1BP35368 520 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 PTDSS1P48651 473 aaKnown RBP6.45□□□□□ -1.38
USP48-209ENST00000487880 FOXI1Q12951 378 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 MPP3Q13368 585 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 PMS2P11Q13670 270 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 SLC29A2Q14542 456 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 NBPF8Q3BBV2 869 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 FAM209BQ5JX69 171 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 IZUMO3Q5VZ72 239 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 HIBCHQ6NVY1 386 aaPredicted RBP6.45□□□□□ -1.38
USP48-209ENST00000487880 PCSK4Q6UW60 755 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 CATSPERGQ6ZRH7 1159 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 TOGARAM2Q6ZUX3 1019 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 RNF44Q7L0R7 432 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 KCTD20Q7Z5Y7 419 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 SLC15A3Q8IY34 581 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 FAM186BQ8IYM0 893 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 VGLL2Q8N8G2 317 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 TOR1AIP2Q8NFQ8 470 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 ATG4AQ8WYN0 398 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 TRIM5Q9C035 493 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 TOR3AQ9H497 397 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 KLC4Q9NSK0 619 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 DKK4Q9UBT3 224 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 ZNF212Q9UDV6 495 aa6.45□□□□□ -1.38
USP48-209ENST00000487880 A0A087WZ62 844 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 TMEM191CA6NGB0 347 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 RAB27BO00194 218 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 AREL1O15033 823 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 FOXN1O15353 648 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 PDHA1P08559 390 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 CPT1AP50416 773 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 PDE6CP51160 858 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 SP2Q02086 613 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 KLF10Q13118 480 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 TXNRD1Q16881 649 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 HECTD2Q5U5R9 776 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 LAIR1Q6GTX8 287 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 USP51Q70EK9 711 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 MORC1Q86VD1 984 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 FKBP10Q96AY3 582 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 FBXL20Q96IG2 436 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 ALG8Q9BVK2 526 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 SCAND2PQ9GZW5 306 aaPredicted RBP6.44□□□□□ -1.38
USP48-209ENST00000487880 PCED1AQ9H1Q7 454 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 FAM83DQ9H4H8 585 aa6.44□□□□□ -1.38
USP48-209ENST00000487880 ADM5C9JUS6 153 aa6.43□□□□□ -1.38
USP48-209ENST00000487880 CYR61O00622 381 aa6.43□□□□□ -1.38
USP48-209ENST00000487880 TYRP1P17643 537 aa6.43□□□□□ -1.38
USP48-209ENST00000487880 GDF5P43026 501 aa6.43□□□□□ -1.38
USP48-209ENST00000487880 ATXN1P54253 815 aaKnown RBP6.43□□□□□ -1.38
USP48-209ENST00000487880 ZNF750Q32MQ0 723 aa6.43□□□□□ -1.38
USP48-209ENST00000487880 PTCHD3Q3KNS1 767 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms