RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 GPR15P49685 360 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 NOP14P78316 857 aaKnown RBP12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 CLDN10P78369 228 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 KRT85P78386 507 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 DNM1Q05193 864 aaKnown RBP12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 USP4Q13107 963 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 TRPC3Q13507 836 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 CUL4BQ13620 913 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 MTF1Q14872 753 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 FOXD4L5Q5VV16 416 aaPredicted RBP12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 TXNDC8Q6A555 127 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 TXNDC11Q6PKC3 985 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 DENND5BQ6ZUT9 1274 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 NELFCDQ8IXH7 590 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 FOXD4L4Q8WXT5 416 aaPredicted RBP12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 PCED1BQ96HM7 432 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 ZFYVE19Q96K21 471 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 TTLL2Q9BWV7 592 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 ELOVL4Q9GZR5 314 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 BLZF1Q9H2G9 400 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 SNX25Q9H3E2 840 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 SLC39A2Q9NP94 309 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 CRTAC1Q9NQ79 661 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 GKN1Q9NS71 199 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 EXOC1Q9NV70 894 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 RAB23Q9ULC3 237 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 CCL26Q9Y258 94 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 ATP6V1DQ9Y5K8 247 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 KIAA1549LQ6ZVL6 1849 aa12.96□□□□□ -0.33
SQSTM1-207ENST00000481335 RALGAPA1Q6GYQ0 2036 aa12.96□□□□□ -0.34
SQSTM1-207ENST00000481335 MYH10P35580 1976 aa12.96□□□□□ -0.34
SQSTM1-207ENST00000481335 MYO16Q9Y6X6 1858 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 CCDC163A0A0D9SF12 145 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 PDXKO00764 312 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 KLRC4O43908 158 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 LRP3O75074 770 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 ATG13O75143 517 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 CST3P01034 146 aaPredicted RBP12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 CKMP06732 381 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 LMO2P25791 158 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 GNL1P36915 607 aaPredicted RBP12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 AFMP43652 599 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 SOX9P48436 509 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 TNK2Q07912 1038 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 GRSF1Q12849 480 aaKnown RBP eCLIP12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 GAS6Q14393 721 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 KCNB1Q14721 858 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 PON2Q15165 354 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 ZNF77Q15935 545 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 WDR72Q3MJ13 1102 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 FBXO43Q4G163 708 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 TMEM196Q5HYL7 178 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 TSSK4Q6SA08 328 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 LONP2Q86WA8 852 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 SCN4BQ8IWT1 228 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 CPA6Q8N4T0 437 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 RDH13Q8NBN7 331 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 CCDC26Q8TAB7 109 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 OSCP1Q8WVF1 389 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 ATP2A3Q93084 1043 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 CCDC127Q96BQ5 260 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 FAM84AQ96KN4 292 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 C8orf48Q96LL4 319 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 SMG9Q9H0W8 520 aaKnown RBP12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 HPS4Q9NQG7 708 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 GMEB2Q9UKD1 530 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 ARHGAP26Q9UNA1 814 aa12.95□□□□□ -0.34
SQSTM1-207ENST00000481335 ATP8B3O60423 1300 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 FAM237AA0A1B0GTK4 181 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 MAPK13O15264 365 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 PFKFB1P16118 471 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 DRD1P21728 446 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 BDNFP23560 247 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 GRIK1P39086 918 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 PSMC1P62191 440 aaKnown RBP12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 SATB1Q01826 763 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 CYP27A1Q02318 531 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 ENPEPQ07075 957 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 PKP1Q13835 747 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 PUM1Q14671 1186 aaKnown RBP eCLIP12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 FOXD4L6Q3SYB3 417 aaPredicted RBP12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 SDHAF4Q5VUM1 108 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 SCARA3Q6AZY7 606 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 LAIR1Q6GTX8 287 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 FOXD4L3Q6VB84 417 aaPredicted RBP12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 KIAA2013Q8IYS2 634 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 KIAA0895Q8NCT3 520 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 OR6B3Q8NGW1 331 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 PARD3BQ8TEW8 1205 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 OVCA2Q8WZ82 227 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 CCDC47Q96A33 483 aaKnown RBP12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 PAGE5Q96GU1 130 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 TNIP3Q96KP6 325 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 SPATA32Q96LK8 384 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 GZF1Q9H116 711 aaPredicted RBP12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 XYLT2Q9H1B5 865 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 EBF3Q9H4W6 596 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 DMAC2Q9NW81 257 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 TRPM5Q9NZQ8 1165 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 GCNT4Q9P109 453 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms