RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 MYRFLQ96LU7 910 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 CYP2S1Q96SQ9 504 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 CGRRF1Q99675 332 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 SNX25Q9H3E2 840 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 SLC39A2Q9NP94 309 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 CRTAC1Q9NQ79 661 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 C2orf42Q9NWW7 574 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 PCDHA7Q9UN72 937 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 MYO16Q9Y6X6 1858 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 MYH10P35580 1976 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 OTOL1A6NHN0 477 aaPredicted RBP16.3■□□□□ 0.2
LIMS3-203ENST00000480744 SOBPA7XYQ1 873 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 K7ESF4 209 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 CLSTN1O94985 981 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 USP17L7P0C7H9 530 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 WARSP23381 471 aaKnown RBP16.3■□□□□ 0.2
LIMS3-203ENST00000480744 BDNFP23560 247 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 GRIK1P39086 918 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 MAGEA11P43364 429 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 CYP24A1Q07973 514 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 GRSF1Q12849 480 aaKnown RBP eCLIP16.3■□□□□ 0.2
LIMS3-203ENST00000480744 ZNF268Q14587 947 aaPredicted RBP16.3■□□□□ 0.2
LIMS3-203ENST00000480744 MTF1Q14872 753 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 PSMD6Q15008 389 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 MAPRE1Q15691 268 aaKnown RBP16.3■□□□□ 0.2
LIMS3-203ENST00000480744 FAM171BQ6P995 826 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 LONP2Q86WA8 852 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 SYNPOQ8N3V7 929 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 FSIP1Q8NA03 581 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 SLC22A12Q96S37 553 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 MRPL45Q9BRJ2 306 aaKnown RBP16.3■□□□□ 0.2
LIMS3-203ENST00000480744 SPAG17Q6Q759 2223 aa16.3■□□□□ 0.2
LIMS3-203ENST00000480744 CACNA1AO00555 2505 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 C2orf78A6NCI8 922 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 PAPSS2O95340 614 aaPredicted RBP16.29■□□□□ 0.2
LIMS3-203ENST00000480744 CST3P01034 146 aaPredicted RBP16.29■□□□□ 0.2
LIMS3-203ENST00000480744 ANXA13P27216 316 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 HOXC13P31276 330 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 IFNAR2P48551 515 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 TNNC1P63316 161 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 AMPD2Q01433 879 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 FAM160A1Q05DH4 1040 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 TRPC3Q13507 836 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 CUL4BQ13620 913 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 KCNB1Q14721 858 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 PDGFRLQ15198 375 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 MDH1BQ5I0G3 518 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 RESP18Q5W5W9 173 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 LAIR1Q6GTX8 287 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 FSTL4Q6MZW2 842 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 LIMS2Q7Z4I7 341 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.29■□□□□ 0.2
LIMS3-203ENST00000480744 GRAMD1CQ8IYS0 662 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 CPA6Q8N4T0 437 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 ARL14EPQ8N8R7 260 aaPredicted RBP16.29■□□□□ 0.2
LIMS3-203ENST00000480744 OR6B3Q8NGW1 331 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 DUS2Q9NX74 493 aaKnown RBP16.29■□□□□ 0.2
LIMS3-203ENST00000480744 WNT6Q9Y6F9 365 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 KIAA1549LQ6ZVL6 1849 aa16.29■□□□□ 0.2
LIMS3-203ENST00000480744 EML5Q05BV3 1969 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 HRO43593 1189 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 EXOC3O60645 756 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 PHACTR2O75167 634 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 PDIA4P13667 645 aaKnown RBP16.28■□□□□ 0.2
LIMS3-203ENST00000480744 GNL1P36915 607 aaPredicted RBP16.28■□□□□ 0.2
LIMS3-203ENST00000480744 SNRPFP62306 86 aaKnown RBP16.28■□□□□ 0.2
LIMS3-203ENST00000480744 LMNB2Q03252 620 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 EHHADHQ08426 723 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 SPEM2Q0P670 501 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 PKP1Q13835 747 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 ZNF77Q15935 545 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 WDR72Q3MJ13 1102 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 TMEM196Q5HYL7 178 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 PKN3Q6P5Z2 889 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 VSTM1Q6UX27 236 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 CEP68Q76N32 757 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 CEP57L1Q8IYX8 460 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 MYCBPAPQ8TBZ2 947 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 PCED1BQ96HM7 432 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 PARD6AQ9NPB6 346 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 DLL3Q9NYJ7 618 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 NXF1Q9UBU9 619 aaKnown RBP16.28■□□□□ 0.2
LIMS3-203ENST00000480744 SERTAD1Q9UHV2 236 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 CFAP45Q9UL16 551 aa16.28■□□□□ 0.2
LIMS3-203ENST00000480744 PVALEFA0A1B0GWK0 134 aa16.27■□□□□ 0.2
LIMS3-203ENST00000480744 MED19A0JLT2 244 aaPredicted RBP16.27■□□□□ 0.2
LIMS3-203ENST00000480744 TRDMT1O14717 391 aaKnown RBP16.27■□□□□ 0.2
LIMS3-203ENST00000480744 EGFP01133 1207 aa16.27■□□□□ 0.2
LIMS3-203ENST00000480744 HDCP19113 662 aa16.27■□□□□ 0.2
LIMS3-203ENST00000480744 CNR2P34972 360 aa16.27■□□□□ 0.2
LIMS3-203ENST00000480744 PXNP49023 591 aaPredicted RBP16.27■□□□□ 0.2
LIMS3-203ENST00000480744 MYL6P60660 151 aa16.27■□□□□ 0.2
LIMS3-203ENST00000480744 USP46P62068 366 aa16.27■□□□□ 0.2
LIMS3-203ENST00000480744 DNM1Q05193 864 aaKnown RBP16.27■□□□□ 0.2
LIMS3-203ENST00000480744 USP4Q13107 963 aa16.27■□□□□ 0.2
LIMS3-203ENST00000480744 KNOP1Q1ED39 458 aaKnown RBP16.27■□□□□ 0.2
LIMS3-203ENST00000480744 NAIF1Q69YI7 327 aaPredicted RBP16.27■□□□□ 0.2
LIMS3-203ENST00000480744 DENND5BQ6ZUT9 1274 aa16.27■□□□□ 0.2
LIMS3-203ENST00000480744 SH3RF2Q8TEC5 729 aa16.27■□□□□ 0.2
LIMS3-203ENST00000480744 OSCP1Q8WVF1 389 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms