RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 FAM186BQ8IYM0 893 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 SMYD4Q8IYR2 804 aaPredicted RBP23.2■■□□□ 1.3
COL9A3-211ENST00000477612 ZNF687Q8N1G0 1237 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 B3GALNT2Q8NCR0 500 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 STKLD1Q8NE28 680 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 MRPS31Q92665 395 aaKnown RBP23.2■■□□□ 1.3
COL9A3-211ENST00000477612 CLDN23Q96B33 292 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 C8orf48Q96LL4 319 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 DPEP3Q9H4B8 488 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 HOOK1Q9UJC3 728 aaKnown RBP23.2■■□□□ 1.3
COL9A3-211ENST00000477612 MAGED2Q9UNF1 606 aaPredicted RBP23.2■■□□□ 1.3
COL9A3-211ENST00000477612 MTF2Q9Y483 593 aaPredicted RBP23.2■■□□□ 1.3
COL9A3-211ENST00000477612 MYO15AQ9UKN7 3530 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 HELZP42694 1942 aaKnown RBP23.2■■□□□ 1.3
COL9A3-211ENST00000477612 FAM170BA6NMN3 283 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 PROB1E7EW31 1015 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 DPYSL4O14531 572 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 TRIM66O15016 1216 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 SMC2O95347 1197 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 CD72P21854 359 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 MRE11P49959 708 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 CDH8P55286 799 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 CYP27A1Q02318 531 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 ANGPT1Q15389 498 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 ALYREFQ86V81 257 aaKnown RBP23.19■■□□□ 1.3
COL9A3-211ENST00000477612 ZC3H3Q8IXZ2 948 aaKnown RBP23.19■■□□□ 1.3
COL9A3-211ENST00000477612 YAF2Q8IY57 180 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 CELF5Q8N6W0 485 aaKnown RBP23.19■■□□□ 1.3
COL9A3-211ENST00000477612 BPIFB1Q8TDL5 484 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 MSANTD3Q96H12 275 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 SDCBP2Q9H190 292 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 SMYD3Q9H7B4 428 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 MRPS17Q9Y2R5 130 aaKnown RBP23.19■■□□□ 1.3
COL9A3-211ENST00000477612 DMDP11532 3685 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 USP34Q70CQ2 3546 aa23.19■■□□□ 1.3
COL9A3-211ENST00000477612 LRRN2O75325 713 aa23.18■■□□□ 1.3
COL9A3-211ENST00000477612 HLA-DRAP01903 254 aa23.18■■□□□ 1.3
COL9A3-211ENST00000477612 KRT13P13646 458 aa23.18■■□□□ 1.3
COL9A3-211ENST00000477612 P4HA1P13674 534 aa23.18■■□□□ 1.3
COL9A3-211ENST00000477612 TARSP26639 723 aaKnown RBP23.18■■□□□ 1.3
COL9A3-211ENST00000477612 GRIK1P39086 918 aa23.18■■□□□ 1.3
COL9A3-211ENST00000477612 NBL1P41271 181 aa23.18■■□□□ 1.3
COL9A3-211ENST00000477612 PPP3CAQ08209 521 aa23.18■■□□□ 1.3
COL9A3-211ENST00000477612 ZNF268Q14587 947 aaPredicted RBP23.18■■□□□ 1.3
COL9A3-211ENST00000477612 TXNDC8Q6A555 127 aa23.18■■□□□ 1.3
COL9A3-211ENST00000477612 DENND5BQ6ZUT9 1274 aa23.18■■□□□ 1.3
COL9A3-211ENST00000477612 GPIHBP1Q8IV16 184 aa23.18■■□□□ 1.3
COL9A3-211ENST00000477612 MAB21L3Q8N8X9 362 aa23.18■■□□□ 1.3
COL9A3-211ENST00000477612 SMARCE1Q969G3 411 aa23.18■■□□□ 1.3
COL9A3-211ENST00000477612 TTLL2Q9BWV7 592 aa23.18■■□□□ 1.3
COL9A3-211ENST00000477612 KIF9Q9HAQ2 790 aa23.18■■□□□ 1.3
COL9A3-211ENST00000477612 CETN3O15182 167 aa23.17■■□□□ 1.3
COL9A3-211ENST00000477612 NCAM2O15394 837 aa23.17■■□□□ 1.3
COL9A3-211ENST00000477612 GTF2H1P32780 548 aa23.17■■□□□ 1.3
COL9A3-211ENST00000477612 AVPR1AP37288 418 aa23.17■■□□□ 1.3
COL9A3-211ENST00000477612 RPS9P46781 194 aaKnown RBP23.17■■□□□ 1.3
COL9A3-211ENST00000477612 NOP14P78316 857 aaKnown RBP23.17■■□□□ 1.3
COL9A3-211ENST00000477612 PLCB2Q00722 1185 aa23.17■■□□□ 1.3
COL9A3-211ENST00000477612 UBXN2BQ14CS0 331 aa23.17■■□□□ 1.3
COL9A3-211ENST00000477612 C1orf228Q6PIY5 440 aa23.17■■□□□ 1.3
COL9A3-211ENST00000477612 C1orf210Q8IVY1 113 aa23.17■■□□□ 1.3
COL9A3-211ENST00000477612 TNIP3Q96KP6 325 aa23.17■■□□□ 1.3
COL9A3-211ENST00000477612 B3GNT5Q9BYG0 378 aa23.17■■□□□ 1.3
COL9A3-211ENST00000477612 BCO2Q9BYV7 579 aa23.17■■□□□ 1.3
COL9A3-211ENST00000477612 ELOVL4Q9GZR5 314 aa23.17■■□□□ 1.3
COL9A3-211ENST00000477612 FAM86C1Q9NVL1 165 aa23.17■■□□□ 1.3
COL9A3-211ENST00000477612 EHD2Q9NZN4 543 aa23.17■■□□□ 1.3
COL9A3-211ENST00000477612 TRIM49P0CI25 452 aa23.16■■□□□ 1.3
COL9A3-211ENST00000477612 TRIM49CP0CI26 452 aa23.16■■□□□ 1.3
COL9A3-211ENST00000477612 ANXA13P27216 316 aa23.16■■□□□ 1.3
COL9A3-211ENST00000477612 RAP1GAPP47736 663 aa23.16■■□□□ 1.3
COL9A3-211ENST00000477612 UNC93AQ86WB7 457 aa23.16■■□□□ 1.3
COL9A3-211ENST00000477612 ADSSL1Q8N142 457 aa23.16■■□□□ 1.3
COL9A3-211ENST00000477612 CRYBG2Q8N1P7 616 aa23.16■■□□□ 1.3
COL9A3-211ENST00000477612 CSGALNACT1Q8TDX6 532 aa23.16■■□□□ 1.3
COL9A3-211ENST00000477612 USP13Q92995 863 aaPredicted RBP23.16■■□□□ 1.3
COL9A3-211ENST00000477612 ELMO3Q96BJ8 720 aa23.16■■□□□ 1.3
COL9A3-211ENST00000477612 C8orf33Q9H7E9 229 aaPredicted RBP23.16■■□□□ 1.3
COL9A3-211ENST00000477612 TMEM8AQ9HCN3 771 aa23.16■■□□□ 1.3
COL9A3-211ENST00000477612 TDP1Q9NUW8 608 aa23.16■■□□□ 1.3
COL9A3-211ENST00000477612 TMEM30AQ9NV96 361 aa23.16■■□□□ 1.3
COL9A3-211ENST00000477612 PIAS3Q9Y6X2 628 aa23.16■■□□□ 1.3
COL9A3-211ENST00000477612 VPS13AQ96RL7 3174 aa23.15■■□□□ 1.3
COL9A3-211ENST00000477612 F8VP50 259 aa23.15■■□□□ 1.3
COL9A3-211ENST00000477612 PFKLP17858 780 aa23.15■■□□□ 1.3
COL9A3-211ENST00000477612 PIK3CAP42336 1068 aa23.15■■□□□ 1.3
COL9A3-211ENST00000477612 ASPAP45381 313 aa23.15■■□□□ 1.3
COL9A3-211ENST00000477612 GCLMP48507 274 aa23.15■■□□□ 1.3
COL9A3-211ENST00000477612 FKBP3Q00688 224 aaKnown RBP23.15■■□□□ 1.3
COL9A3-211ENST00000477612 PAQR9Q6ZVX9 377 aa23.15■■□□□ 1.3
COL9A3-211ENST00000477612 TAS1R2Q8TE23 839 aa23.15■■□□□ 1.3
COL9A3-211ENST00000477612 FAM3CQ92520 227 aa23.15■■□□□ 1.3
COL9A3-211ENST00000477612 ERCC4Q92889 916 aaPredicted RBP23.15■■□□□ 1.3
COL9A3-211ENST00000477612 FAXDC2Q96IV6 333 aa23.15■■□□□ 1.3
COL9A3-211ENST00000477612 FAM83CQ9BQN1 747 aa23.15■■□□□ 1.3
COL9A3-211ENST00000477612 ZNF518BQ9C0D4 1074 aa23.15■■□□□ 1.3
COL9A3-211ENST00000477612 THG1LQ9NWX6 298 aaKnown RBP23.15■■□□□ 1.3
COL9A3-211ENST00000477612 GCNT4Q9P109 453 aa23.15■■□□□ 1.3
COL9A3-211ENST00000477612 GADD45BO75293 160 aaPredicted RBP23.14■■□□□ 1.29
COL9A3-211ENST00000477612 PPP3CCP48454 512 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms