RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 APOL6Q9BWW8 343 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 UBA6A0AVT1 1052 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-209ENST00000472056 DGAT1O75907 488 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 PECAM1P16284 738 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-209ENST00000472056 RNF135Q8IUD6 432 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 ADSSL1Q8N142 457 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 NSUN6Q8TEA1 469 aaKnown RBP13.79□□□□□ -0.2
COL6A3-209ENST00000472056 TRIM51Q9BSJ1 452 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 SLC38A7Q9NVC3 462 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 IL12AP29459 219 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 ADORA1P30542 326 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 SARSP49591 514 aaKnown RBP13.79□□□□□ -0.2
COL6A3-209ENST00000472056 POU4F1Q01851 419 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 SCARA5Q6ZMJ2 495 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 TPCN2Q8NHX9 752 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 OSBP2Q969R2 916 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 DMAP1Q9NPF5 467 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-209ENST00000472056 AKAP7Q9P0M2 348 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-209ENST00000472056 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-209ENST00000472056 PCSK2P16519 638 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 HOXB8P17481 243 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-209ENST00000472056 DNAJB2P25686 324 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 CACNA2D1P54289 1103 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 GALCP54803 685 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 NFIAQ12857 509 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 CAMKK2Q96RR4 588 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 PAGR1Q9BTK6 254 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 ZNF518BQ9C0D4 1074 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 THAP1Q9NVV9 213 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 ATP6V1HQ9UI12 483 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 SHOC2Q9UQ13 582 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 ACAT1P24752 427 aaKnown RBP13.79□□□□□ -0.2
COL6A3-209ENST00000472056 MYL6P60660 151 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 OASLQ15646 514 aaKnown RBP13.79□□□□□ -0.2
COL6A3-209ENST00000472056 PID1Q7Z2X4 250 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 GLYCTKQ8IVS8 523 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 DYRK4Q9NR20 520 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 IARS2Q9NSE4 1012 aaKnown RBP13.79□□□□□ -0.2
COL6A3-209ENST00000472056 IQGAP1P46940 1657 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 WEE2P0C1S8 567 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 MLH1P40692 756 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 CRKP46108 304 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 HIST2H2ACQ16777 129 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-209ENST00000472056 HIST2H2AA3Q6FI13 130 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 C11orf63Q6NUN7 778 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 DNAJC7Q99615 494 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 CD4P01730 458 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 PRIM2P49643 509 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 LRRC24Q50LG9 513 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 TC2NQ8N9U0 490 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 IL17REQ8NFR9 667 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 RMDN3Q96TC7 470 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 LXNQ9BS40 222 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 CRNNQ9UBG3 495 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-209ENST00000472056 HEG1Q9ULI3 1381 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 INO80Q9ULG1 1556 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-209ENST00000472056 USP27XA6NNY8 438 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 TAF4O00268 1085 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 GMFBP60983 142 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 C2CD6Q53TS8 623 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 BTN2A1Q7KYR7 527 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 TFB1MQ8WVM0 346 aaKnown RBP13.78□□□□□ -0.2
COL6A3-209ENST00000472056 PCDHA6Q9UN73 950 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 PCDHA8Q9Y5H6 950 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 NLRP1Q9C000 1473 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-209ENST00000472056 TRIM49BA6NDI0 452 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 MYL12AP19105 171 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 METTL16Q86W50 562 aaKnown RBP13.78□□□□□ -0.2
COL6A3-209ENST00000472056 SH3BP4Q9P0V3 963 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 PPP2R1BP30154 601 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 NDUFAF6Q330K2 333 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 USP17L2Q6R6M4 530 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 BTBD10Q9BSF8 475 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 RPAP3Q9H6T3 665 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-209ENST00000472056 GTF3C4Q9UKN8 822 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 CORO1CQ9ULV4 474 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-209ENST00000472056 PKP3Q9Y446 797 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 SPACA6W5XKT8 324 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 SDR42E2A6NKP2 422 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 TMEM114B3SHH9 223 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 GYPCP04921 128 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 TTLL4Q14679 1199 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 CATSPER4Q7RTX7 472 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 ARID3BQ8IVW6 561 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-209ENST00000472056 COA1Q9GZY4 146 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 NEMP1O14524 444 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 NR2C2P49116 596 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 SLC27A3Q5K4L6 730 aa13.78□□□□□ -0.2
COL6A3-209ENST00000472056 MAGEB2O15479 319 aa13.77□□□□□ -0.2
COL6A3-209ENST00000472056 ZNF211Q13398 564 aaPredicted RBP13.77□□□□□ -0.2
COL6A3-209ENST00000472056 THEMIS2Q5TEJ8 643 aa13.77□□□□□ -0.2
COL6A3-209ENST00000472056 MRNIPQ6NTE8 343 aa13.77□□□□□ -0.2
COL6A3-209ENST00000472056 CENPLQ8N0S6 344 aaPredicted RBP13.77□□□□□ -0.2
COL6A3-209ENST00000472056 MPP4Q96JB8 637 aa13.77□□□□□ -0.2
COL6A3-209ENST00000472056 PUS7LQ9H0K6 701 aaKnown RBP13.77□□□□□ -0.2
COL6A3-209ENST00000472056 CIDEBQ9UHD4 219 aa13.77□□□□□ -0.2
COL6A3-209ENST00000472056 MAGED2Q9UNF1 606 aaPredicted RBP13.77□□□□□ -0.2
COL6A3-209ENST00000472056 RPLP2P05387 115 aaKnown RBP13.77□□□□□ -0.2
COL6A3-209ENST00000472056 COILP38432 576 aaPredicted RBP13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms