RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 FAM186BQ8IYM0 893 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 FAM43AQ8N2R8 423 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 TTC17Q96AE7 1141 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 MARS2Q96GW9 593 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 BOD1Q96IK1 185 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 TNIP3Q96KP6 325 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 TRIM6Q9C030 488 aaPredicted RBP5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 VPS33BQ9H267 617 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 SUDS3Q9H7L9 328 aaPredicted RBP5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 YY1AP1Q9H869 796 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 PLEKHA5Q9HAU0 1116 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 ZCCHC17Q9NP64 241 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 ATP8A2Q9NTI2 1148 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 SMC4Q9NTJ3 1288 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 C14orf119Q9NWQ9 140 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 NKIRAS2Q9NYR9 191 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 KCNE5Q9UJ90 142 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 DNM3Q9UQ16 869 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 GPR52Q9Y2T5 361 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 RRP15Q9Y3B9 282 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 LRRFIP2Q9Y608 721 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 TNKSO95271 1327 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 CDHR4A6H8M9 788 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 FOXN3O00409 490 aaPredicted RBP5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 GPR39O43194 453 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 TLR5O60602 858 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 MATN4O95460 622 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 BAG2O95816 211 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 CD4P01730 458 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 CCDC175P0C221 793 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 CKBP12277 381 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 HSD3B1P14060 373 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 KRT20P35900 424 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 UBXN2AP68543 259 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 MALLQ13021 153 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 CYP2A13Q16696 494 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 GEN1Q17RS7 908 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 ARMC4Q5T2S8 1044 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 RNF219Q5W0B1 726 aaPredicted RBP5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 OTUD7BQ6GQQ9 843 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 ISM2Q6H9L7 571 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 FASTKD5Q7L8L6 764 aaKnown RBP5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 CATSPER4Q7RTX7 472 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 SPATA5Q8NB90 893 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 OR8H1Q8NGG4 311 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 GCC1Q96CN9 775 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 NAF1Q96HR8 494 aaKnown RBP5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 ISCA1Q9BUE6 129 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 PUS7LQ9H0K6 701 aaKnown RBP5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 KLK15Q9H2R5 256 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 UNKLQ9H9P5 680 aaKnown RBP5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 IL17RBQ9NRM6 502 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 DIAPH3Q9NSV4 1193 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 TMEM74BQ9NUR3 256 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 DNAJC28Q9NX36 388 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 FOXJ2Q9P0K8 574 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 PDP2Q9P2J9 529 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 GJD2Q9UKL4 321 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 TRHDEQ9UKU6 1024 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 PCDHGA2Q9Y5H1 932 aa5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 SETD1BQ9UPS6 1966 aaKnown RBP5.45□□□□□ -1.54
CCDC88A-210ENST00000468534 TCRBV7S2A1N4TA0A589 114 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 KIAA0391O15091 583 aaKnown RBP5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 GPR32O75388 356 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 ENDOD1O94919 500 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 MCAMP43121 646 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 RARRES1P49788 294 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 ALDH5A1P51649 535 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 ATXN1P54253 815 aaKnown RBP5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 AK2P54819 239 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 NOMO3P69849 1222 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 GRM1Q13255 1194 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 SLMAPQ14BN4 828 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 NOMO2Q5JPE7 1267 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 LRCH2Q5VUJ6 765 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 FAAH2Q6GMR7 532 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 RETSATQ6NUM9 610 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 TAF4BQ92750 862 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 RSRC1Q96IZ7 334 aaKnown RBP5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 MYD88Q99836 296 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 SLC13A1Q9BZW2 595 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 GSTO2Q9H4Y5 243 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 MAN1C1Q9NR34 630 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 TRMT13Q9NUP7 481 aaKnown RBP5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 ASB6Q9NWX5 421 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 KCTD5Q9NXV2 234 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 RRN3Q9NYV6 651 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 RABL2AQ9UBK7 228 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 DDX20Q9UHI6 824 aaKnown RBP5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 ZNF112Q9UJU3 913 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 GTF3C4Q9UKN8 822 aa5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 FRMPD2Q68DX3 1309 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-210ENST00000468534 ARHGEF17Q96PE2 2063 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 SYNDIG1LA6NDD5 238 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 LRRC3CA6NJW4 275 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 FAM25EA8MYX2 175 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 ERC2O15083 957 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 TEX33O43247 280 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 ZFPL1O95159 310 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms