RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 ELMO3Q96BJ8 720 aa22.07■■□□□ 1.12
COL6A1-203ENST00000466285 HPDLQ96IR7 371 aa22.07■■□□□ 1.12
COL6A1-203ENST00000466285 TFIP11Q9UBB9 837 aaKnown RBP22.07■■□□□ 1.12
COL6A1-203ENST00000466285 CHD8Q9HCK8 2581 aa22.07■■□□□ 1.12
COL6A1-203ENST00000466285 MAP1BP46821 2468 aaKnown RBP22.06■■□□□ 1.12
COL6A1-203ENST00000466285 STX6O43752 255 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 CKMP06732 381 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 HOXA6P31267 233 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 RPL10AP62906 217 aaKnown RBP22.06■■□□□ 1.12
COL6A1-203ENST00000466285 FAM160A1Q05DH4 1040 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 CSRP2Q16527 193 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 GAB4Q2WGN9 574 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 EML3Q32P44 896 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 CEP68Q76N32 757 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 SYNPOQ8N3V7 929 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 DHX58Q96C10 678 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 RTKNQ9BST9 563 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 LINC00597Q9H2U6 94 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 DPEP3Q9H4B8 488 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 ECT2Q9H8V3 914 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 KBTBD4Q9NVX7 518 aa22.06■■□□□ 1.12
COL6A1-203ENST00000466285 CACNA1BQ00975 2339 aa22.05■■□□□ 1.12
COL6A1-203ENST00000466285 SLC30A4O14863 429 aa22.05■■□□□ 1.12
COL6A1-203ENST00000466285 PDGFRBP09619 1106 aa22.05■■□□□ 1.12
COL6A1-203ENST00000466285 BDNFP23560 247 aa22.05■■□□□ 1.12
COL6A1-203ENST00000466285 STK38Q15208 465 aa22.05■■□□□ 1.12
COL6A1-203ENST00000466285 SFTPA1Q8IWL2 248 aa22.05■■□□□ 1.12
COL6A1-203ENST00000466285 CCDC65Q8IXS2 484 aa22.05■■□□□ 1.12
COL6A1-203ENST00000466285 SH3RF2Q8TEC5 729 aa22.05■■□□□ 1.12
COL6A1-203ENST00000466285 OSCP1Q8WVF1 389 aa22.05■■□□□ 1.12
COL6A1-203ENST00000466285 ANKRD36BP1Q96IX9 119 aa22.05■■□□□ 1.12
COL6A1-203ENST00000466285 ARRDC1-AS1Q9H2J1 176 aa22.05■■□□□ 1.12
COL6A1-203ENST00000466285 TNMDQ9H2S6 317 aa22.05■■□□□ 1.12
COL6A1-203ENST00000466285 TMEM206Q9H813 350 aa22.05■■□□□ 1.12
COL6A1-203ENST00000466285 AGPAT3Q9NRZ7 376 aa22.05■■□□□ 1.12
COL6A1-203ENST00000466285 CNOT1A5YKK6 2376 aaKnown RBP22.04■■□□□ 1.12
COL6A1-203ENST00000466285 TRAV19A0A0A6YYK7 116 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 AXIN1O15169 862 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 CLIC2O15247 247 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 CST3P01034 146 aaPredicted RBP22.04■■□□□ 1.12
COL6A1-203ENST00000466285 CNR2P34972 360 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 LHX1P48742 406 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 ASIC1P78348 528 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 MESP2Q0VG99 397 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 GRSF1Q12849 480 aaKnown RBP eCLIP22.04■■□□□ 1.12
COL6A1-203ENST00000466285 NELFCDQ8IXH7 590 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 RDH13Q8NBN7 331 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 RPLP0P6Q8NHW5 317 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 PLEKHO2Q8TD55 490 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 NETO1Q8TDF5 533 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 GAB3Q8WWW8 586 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 PCED1BQ96HM7 432 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 INTS4Q96HW7 963 aaKnown RBP22.04■■□□□ 1.12
COL6A1-203ENST00000466285 P2RY13Q9BPV8 354 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 DUS2Q9NX74 493 aaKnown RBP22.04■■□□□ 1.12
COL6A1-203ENST00000466285 ZMYM5Q9UJ78 669 aa22.04■■□□□ 1.12
COL6A1-203ENST00000466285 NUP205Q92621 2012 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 DCLK1O15075 740 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 SPTLC2O15270 562 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 LRP3O75074 770 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 RPP40O75818 363 aaKnown RBP22.03■■□□□ 1.12
COL6A1-203ENST00000466285 USP17L7P0C7H9 530 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 WARSP23381 471 aaKnown RBP22.03■■□□□ 1.12
COL6A1-203ENST00000466285 PCSK1P29120 753 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 MAGEA11P43364 429 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 CYP2J2P51589 502 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 CYP27A1Q02318 531 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 EHHADHQ08426 723 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 PDGFRLQ15198 375 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 FOXD4L6Q3SYB3 417 aaPredicted RBP22.03■■□□□ 1.12
COL6A1-203ENST00000466285 MDH1BQ5I0G3 518 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 PPM1JQ5JR12 505 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 TCEAL6Q6IPX3 200 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 CC2D1AQ6P1N0 951 aaPredicted RBP22.03■■□□□ 1.12
COL6A1-203ENST00000466285 FOXD4L3Q6VB84 417 aaPredicted RBP22.03■■□□□ 1.12
COL6A1-203ENST00000466285 TRAPPC11Q7Z392 1133 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 WDR49Q8IV35 697 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 SCFD1Q8WVM8 642 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 ZNF516Q92618 1163 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 TCEAL3Q969E4 200 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 FUBP3Q96I24 572 aaKnown RBP eCLIP22.03■■□□□ 1.12
COL6A1-203ENST00000466285 BLZF1Q9H2G9 400 aa22.03■■□□□ 1.12
COL6A1-203ENST00000466285 UXTQ9UBK9 157 aaPredicted RBP22.03■■□□□ 1.12
COL6A1-203ENST00000466285 ZNF233A6NK53 670 aa22.02■■□□□ 1.12
COL6A1-203ENST00000466285 K7ELQ4 463 aaPredicted RBP22.02■■□□□ 1.12
COL6A1-203ENST00000466285 EPN2O95208 641 aa22.02■■□□□ 1.12
COL6A1-203ENST00000466285 TNNC2P02585 160 aa22.02■■□□□ 1.12
COL6A1-203ENST00000466285 DLATP10515 647 aaKnown RBP22.02■■□□□ 1.12
COL6A1-203ENST00000466285 RAP1GAPP47736 663 aa22.02■■□□□ 1.12
COL6A1-203ENST00000466285 CASP4P49662 377 aa22.02■■□□□ 1.12
COL6A1-203ENST00000466285 SNRNP35Q16560 246 aaKnown RBP22.02■■□□□ 1.12
COL6A1-203ENST00000466285 FAM26FQ5R3K3 315 aa22.02■■□□□ 1.12
COL6A1-203ENST00000466285 GRAMD1CQ8IYS0 662 aa22.02■■□□□ 1.12
COL6A1-203ENST00000466285 CPA6Q8N4T0 437 aa22.02■■□□□ 1.12
COL6A1-203ENST00000466285 SPATA18Q8TC71 538 aa22.02■■□□□ 1.12
COL6A1-203ENST00000466285 ZNF518BQ9C0D4 1074 aa22.02■■□□□ 1.12
COL6A1-203ENST00000466285 CDH9Q9ULB4 789 aa22.02■■□□□ 1.12
COL6A1-203ENST00000466285 ABCA7Q8IZY2 2146 aa22.01■■□□□ 1.11
COL6A1-203ENST00000466285 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.01■■□□□ 1.11
COL6A1-203ENST00000466285 F8VP50 259 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms