RNA–Protein interactions for RNA: ENST00000464480.1

HMGXB4-205, Transcript of HMG-box containing 4, humanhuman

TSL 2

Gene HMGXB4, Length 559 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-205ENST00000464480 DGKEP52429 567 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 ADAM17P78536 824 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 EFEMP1Q12805 493 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 MYO1EQ12965 1108 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 SPATS1Q496A3 300 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 TIGD2Q4W5G0 525 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 RBM20Q5T481 1227 aaKnown RBP4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 ARHGAP40Q5TG30 622 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 PLAG1Q6DJT9 500 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 RGS7BPQ6MZT1 257 aaPredicted RBP4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 MZT2AQ6P582 158 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 RNF207Q6ZRF8 634 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 KRT73Q86Y46 540 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 ZNF280BQ86YH2 543 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 SPARTQ8N0X7 666 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 ZNF527Q8NB42 609 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 EXTL1Q92935 676 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 LTV1Q96GA3 475 aaPredicted RBP4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 ZNF668Q96K58 619 aaPredicted RBP4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 SNX27Q96L92 541 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 PLEKHG4BQ96PX9 1271 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 UNKLQ9H9P5 680 aaKnown RBP4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 PPCSQ9HAB8 311 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 DNMT3BQ9UBC3 853 aaKnown RBP4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 SLC39A10Q9ULF5 831 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 NDRG4Q9ULP0 352 aaKnown RBP4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 TBC1D30Q9Y2I9 924 aa4.38□□□□□ -1.71
HMGXB4-205ENST00000464480 FAM234BA2RU67 622 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 RGS10O43665 173 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 SRGAP2O75044 1071 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 KCNA3P22001 575 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 PDE6CP51160 858 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 ITGA8P53708 1063 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 SLC25A3Q00325 362 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 GUCY1B3Q02153 619 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 FSTL1Q12841 308 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 PUM3Q15397 648 aaKnown RBP4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 ELF2Q15723 593 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 ZNF750Q32MQ0 723 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 ZIK1Q3SY52 487 aaPredicted RBP4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 PRR16Q569H4 304 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 CERCAMQ5T4B2 595 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 ICE2Q659A1 982 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 FCRL6Q6DN72 434 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 CERS3Q8IU89 383 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 FAM109AQ8N4B1 249 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 B3GALNT2Q8NCR0 500 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 ZNF384Q8TF68 577 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 NACC2Q96BF6 587 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 FAM136AQ96C01 138 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 ADAM2Q99965 735 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 HERPUD2Q9BSE4 406 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 KRTAP4-7Q9BYR0 210 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 KRTAP3-1Q9BYR8 98 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.37□□□□□ -1.711e-6■■■■□ 21.2
HMGXB4-205ENST00000464480 CXorf36Q9H7Y0 433 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 NECTIN3Q9NQS3 549 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 TBCCD1Q9NVR7 557 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 RGL1Q9NZL6 768 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 CAPN11Q9UMQ6 739 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 FZD1Q9UP38 647 aa4.37□□□□□ -1.71
HMGXB4-205ENST00000464480 A0A087WZ62 844 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 UNC119BA6NIH7 251 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 TMEM200CA6NKL6 621 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 hCG_1984214I3L0E3 225 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 KCNQ3O43525 872 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 NBNO60934 754 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 SPDEFO95238 335 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 CSTBP04080 98 aaKnown RBP4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 NR4A1P22736 598 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 GABRB3P28472 473 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 ITIH3Q06033 890 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 CDSNQ15517 529 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 NPY5RQ15761 445 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 CCDC38Q502W7 563 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 INO80DQ53TQ3 878 aaPredicted RBP4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 TEDDM1Q5T9Z0 273 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 ARL6IP4Q66PJ3 421 aaKnown RBP4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 MRNIPQ6NTE8 343 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 CRTC1Q6UUV9 634 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 ANKRD42Q8N9B4 389 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 GLIS1Q8NBF1 620 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 CCT6BQ92526 530 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 HAS1Q92839 578 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 PPP2R3CQ969Q6 453 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 FUBP1Q96AE4 644 aaKnown RBP4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 TPSD1Q9BZJ3 242 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 ZBTB26Q9HCK0 441 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 DKK4Q9UBT3 224 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 TESQ9UGI8 421 aaKnown RBP4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 SERTAD3Q9UJW9 196 aa4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 MRPS17Q9Y2R5 130 aaKnown RBP4.36□□□□□ -1.71
HMGXB4-205ENST00000464480 CD3EAPO15446 510 aaKnown RBP4.35□□□□□ -1.71
HMGXB4-205ENST00000464480 COQ9O75208 318 aa4.35□□□□□ -1.71
HMGXB4-205ENST00000464480 C1SP09871 688 aa4.35□□□□□ -1.71
HMGXB4-205ENST00000464480 SRGNP10124 158 aa4.35□□□□□ -1.71
HMGXB4-205ENST00000464480 PPP3CBP16298 524 aa4.35□□□□□ -1.71
HMGXB4-205ENST00000464480 EGR1P18146 543 aa4.35□□□□□ -1.71
HMGXB4-205ENST00000464480 ZFP36P26651 326 aaKnown RBP4.35□□□□□ -1.71
HMGXB4-205ENST00000464480 PRKAR1BP31321 381 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms