RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 CBWD2Q8IUF1 395 aa16.46■□□□□ 0.23
SKA3-204ENST00000462482 SH3RF2Q8TEC5 729 aa16.46■□□□□ 0.23
SKA3-204ENST00000462482 MYLPFQ96A32 169 aa16.46■□□□□ 0.23
SKA3-204ENST00000462482 SPATA17Q96L03 361 aa16.46■□□□□ 0.23
SKA3-204ENST00000462482 CYP2S1Q96SQ9 504 aa16.46■□□□□ 0.23
SKA3-204ENST00000462482 PKMYT1Q99640 499 aa16.46■□□□□ 0.23
SKA3-204ENST00000462482 FGFBP2Q9BYJ0 223 aa16.46■□□□□ 0.23
SKA3-204ENST00000462482 ARRDC1-AS1Q9H2J1 176 aa16.46■□□□□ 0.23
SKA3-204ENST00000462482 HSPBP1Q9NZL4 362 aa16.46■□□□□ 0.23
SKA3-204ENST00000462482 MTMR6Q9Y217 621 aa16.46■□□□□ 0.23
SKA3-204ENST00000462482 CEP250Q9BV73 2442 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 A0A087X0B3 334 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 OTOL1A6NHN0 477 aaPredicted RBP16.45■□□□□ 0.22
SKA3-204ENST00000462482 TRIM66O15016 1216 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 SPTLC2O15270 562 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 EIF3DO15371 548 aaKnown RBP eCLIP16.45■□□□□ 0.22
SKA3-204ENST00000462482 PDGFRBP09619 1106 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 PFKLP17858 780 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 TNNI1P19237 187 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 NASPP49321 788 aaPredicted RBP16.45■□□□□ 0.22
SKA3-204ENST00000462482 PSMC1P62191 440 aaKnown RBP16.45■□□□□ 0.22
SKA3-204ENST00000462482 USP4Q13107 963 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 ELF2Q15723 593 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 ZNF77Q15935 545 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 PKN3Q6P5Z2 889 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 FAM171BQ6P995 826 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 DENND5BQ6ZUT9 1274 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 HS2ST1Q7LGA3 356 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 ARL14EPQ8N8R7 260 aaPredicted RBP16.45■□□□□ 0.22
SKA3-204ENST00000462482 IQUBQ8NA54 791 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 OR5B17Q8NGF7 314 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 CXorf38Q8TB03 319 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 CHFRQ96EP1 664 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 FAM84AQ96KN4 292 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 FOXD4L1Q9NU39 408 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 WNT6Q9Y6F9 365 aa16.45■□□□□ 0.22
SKA3-204ENST00000462482 ATP2C2O75185 946 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 TADA3O75528 432 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 CLSTN1O94985 981 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 EPN2O95208 641 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 APBB3O95704 486 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 DLATP10515 647 aaKnown RBP16.44■□□□□ 0.22
SKA3-204ENST00000462482 WARSP23381 471 aaKnown RBP16.44■□□□□ 0.22
SKA3-204ENST00000462482 BDNFP23560 247 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 GNL1P36915 607 aaPredicted RBP16.44■□□□□ 0.22
SKA3-204ENST00000462482 PPP3CCP48454 512 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 TNNC1P63316 161 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 TRPC3Q13507 836 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 FAM26FQ5R3K3 315 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 SYT13Q7L8C5 426 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 TRAPPC11Q7Z392 1133 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 KBTBD6Q86V97 674 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 RDH13Q8NBN7 331 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 LINC00301Q8NCQ3 95 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 RPLP0P6Q8NHW5 317 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 DHX58Q96C10 678 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 HHIPQ96QV1 700 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 TRIM9Q9C026 710 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 ARHGAP26Q9UNA1 814 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 PCDHGA5Q9Y5G8 931 aa16.44■□□□□ 0.22
SKA3-204ENST00000462482 C2orf78A6NCI8 922 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 HCRTO43612 131 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 PPP6R2O75170 966 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 RHOBTB1O94844 696 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 ADRB1P08588 477 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 ZNF806P0C7X5 589 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 LMO2P25791 158 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 SNRPFP62306 86 aaKnown RBP16.43■□□□□ 0.22
SKA3-204ENST00000462482 SNRNP35Q16560 246 aaKnown RBP16.43■□□□□ 0.22
SKA3-204ENST00000462482 CCDC142Q17RM4 750 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 EML3Q32P44 896 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 OR6B3Q8NGW1 331 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 MYCBPAPQ8TBZ2 947 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 KBTBD7Q8WVZ9 684 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 CCDC127Q96BQ5 260 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 CNTNAP3BQ96NU0 1288 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 SLC22A12Q96S37 553 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 CNTNAP3Q9BZ76 1288 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 MAGEF1Q9HAY2 307 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 KBTBD4Q9NVX7 518 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 GCNT4Q9P109 453 aa16.43■□□□□ 0.22
SKA3-204ENST00000462482 NCOR2Q9Y618 2525 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 K7ELQ4 463 aaPredicted RBP16.42■□□□□ 0.22
SKA3-204ENST00000462482 SLC9A3R1O14745 358 aaPredicted RBP16.42■□□□□ 0.22
SKA3-204ENST00000462482 GDF9O60383 454 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 CUTAO60888 179 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 PHACTR2O75167 634 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 ABL1P00519 1130 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 FAM163BP0C2L3 166 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 TCF3P15923 654 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 CYP2J2P51589 502 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 DMC1Q14565 340 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 SF3A2Q15428 464 aaKnown RBP16.42■□□□□ 0.22
SKA3-204ENST00000462482 MDH1BQ5I0G3 518 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 TDRD10Q5VZ19 366 aaKnown RBP16.42■□□□□ 0.22
SKA3-204ENST00000462482 LIMS2Q7Z4I7 341 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 C11orf74Q86VG3 221 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 XXYLT1Q8NBI6 393 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 TSTD1Q8NFU3 115 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 RIN3Q8TB24 985 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms