RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 GRIP2Q9C0E4 1043 aa12.25□□□□□ -0.45
CPSF3-202ENST00000460593 UGT1A7Q9HAW7 530 aa12.25□□□□□ -0.45
CPSF3-202ENST00000460593 UGT1A10Q9HAW8 530 aa12.25□□□□□ -0.45
CPSF3-202ENST00000460593 UGT1A8Q9HAW9 530 aa12.25□□□□□ -0.45
CPSF3-202ENST00000460593 S100A14Q9HCY8 104 aa12.25□□□□□ -0.45
CPSF3-202ENST00000460593 CAPN8A6NHC0 703 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 DDTLA6NHG4 134 aaPredicted RBP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 MAGEC1O60732 1142 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 PABPC4LP0CB38 370 aaKnown RBP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 WNT7BP56706 349 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 YWHAGP61981 247 aaKnown RBP eCLIP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 MAP3K10Q02779 954 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 CCDC142Q17RM4 750 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 CDC42EP5Q6NZY7 148 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 DUS1LQ6P1R4 473 aaKnown RBP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 ACAD11Q709F0 780 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 MON1BQ7L1V2 547 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 DHDDSQ86SQ9 333 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 FAM163AQ96GL9 167 aaPredicted RBP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 SRPK1Q96SB4 655 aaKnown RBP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 GLT8D2Q9H1C3 349 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 ACSS3Q9H6R3 686 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 GGA1Q9UJY5 639 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 TDRKHQ9Y2W6 561 aaKnown RBP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 LOC100653049A0A140TA62 436 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 A0A1B0GTW7 788 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 TM9SF1O15321 606 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 LYPLA1O75608 230 aaPredicted RBP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 KRT34O76011 436 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 PCSK6P29122 969 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 ELK3P41970 407 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 ATXN3P54252 364 aaPredicted RBP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 OGDHQ02218 1023 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 ACAP1Q15027 740 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 R3HDM1Q15032 1099 aaKnown RBP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 DOK7Q18PE1 504 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 TRMT5Q32P41 509 aaKnown RBP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 FAM102BQ5T8I3 360 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 RSPH3Q86UC2 560 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 OGFOD1Q8N543 542 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 ZNF513Q8N8E2 541 aaPredicted RBP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 ATP11CQ8NB49 1132 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 EXD1Q8NHP7 514 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 CFAP36Q96G28 342 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 APOL6Q9BWW8 343 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 TAGLN3Q9UI15 199 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 APPL1Q9UKG1 709 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 STRIP2Q9ULQ0 834 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 VILLO15195 856 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 PSTPIP1O43586 416 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 FUT4P22083 530 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 VCPP55072 806 aaKnown RBP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 ZNF252P-AS1Q0IIN9 211 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 SPOCD1Q6ZMY3 1216 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 SEPT12Q8IYM1 358 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 METTL25Q8N6Q8 603 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 FAM172AQ8WUF8 416 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 OLFM3Q96PB7 478 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 MCEEQ96PE7 176 aa12.24□□□□□ -0.45
CPSF3-202ENST00000460593 IQCGQ9H095 443 aaKnown RBP12.24□□□□□ -0.45
CPSF3-202ENST00000460593 SBF2Q86WG5 1849 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 UBE4BO95155 1302 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 A0A0J9YVX5 310 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 TRIM49D1C9J1S8 452 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 KBTBD13C9JR72 458 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 H0YIN7 160 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 P4HA2O15460 535 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 UQCRBP14927 111 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 CD1EP15812 388 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 ZNF200P98182 395 aaPredicted RBP12.23□□□□□ -0.45
CPSF3-202ENST00000460593 CCNIQ14094 377 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 OASLQ15646 514 aaKnown RBP12.23□□□□□ -0.45
CPSF3-202ENST00000460593 PPP6R3Q5H9R7 873 aaPredicted RBP12.23□□□□□ -0.45
CPSF3-202ENST00000460593 FAM182BQ5T319 152 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 ACBD5Q5T8D3 534 aaPredicted RBP12.23□□□□□ -0.45
CPSF3-202ENST00000460593 TMEM270Q6UE05 265 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 NME8Q8N427 588 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 PPM1NQ8N819 430 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 TMEM206Q9H813 350 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 XPO7Q9UIA9 1087 aaKnown RBP12.23□□□□□ -0.45
CPSF3-202ENST00000460593 TMCO1Q9UM00 188 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 TBC1D30Q9Y2I9 924 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 C15orf38-AP3S2A0A0A6YYH1 394 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 CXorf49A8MYA2 514 aaPredicted RBP12.23□□□□□ -0.45
CPSF3-202ENST00000460593 F8W8V4 182 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 FOSP01100 380 aaPredicted RBP12.23□□□□□ -0.45
CPSF3-202ENST00000460593 DHRS4L1P0CG22 281 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 SMIM18P0DKX4 95 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 RPL22P35268 128 aaKnown RBP12.23□□□□□ -0.45
CPSF3-202ENST00000460593 MSX2P35548 267 aaPredicted RBP12.23□□□□□ -0.45
CPSF3-202ENST00000460593 OTUD4Q01804 1114 aaKnown RBP12.23□□□□□ -0.45
CPSF3-202ENST00000460593 IYDQ6PHW0 289 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 ARPINQ7Z6K5 226 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 HPS6Q86YV9 775 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 UNC45BQ8IWX7 931 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 ACTL9Q8TC94 416 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 APOPT1Q96IL0 206 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 FAM213AQ9BRX8 229 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 KLHL4Q9C0H6 718 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms