RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 LGI4Q8N135 537 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 NUP93Q8N1F7 819 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 ESX1Q8N693 406 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 TTC9BQ8N6N2 239 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 FAM169BQ8N8A8 192 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 ZSWIM2Q8NEG5 633 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 CCDC110Q8TBZ0 833 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 ADAMTS18Q8TE60 1221 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 CASP10Q92851 521 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 USP13Q92995 863 aaPredicted RBP5.81□□□□□ -1.48
VPS41-209ENST00000457055 RBM17Q96I25 401 aaKnown RBP5.81□□□□□ -1.48
VPS41-209ENST00000457055 RUFY1Q96T51 708 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 ZPBPQ9BS86 351 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 PUS7LQ9H0K6 701 aaKnown RBP5.81□□□□□ -1.48
VPS41-209ENST00000457055 PARVGQ9HBI0 331 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 GPR108Q9NPR9 543 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 FNIP2Q9P278 1114 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 TBC1D14Q9P2M4 693 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 ZBTB21Q9ULJ3 1066 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 LIMCH1Q9UPQ0 1083 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 INVSQ9Y283 1065 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 LRCH1Q9Y2L9 728 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 TNKSO95271 1327 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 CLRN2A0PK11 232 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 MROH6A6NGR9 719 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 GABRDO14764 452 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 CAPN9O14815 690 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 IKBKBO14920 756 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 RIPK2O43353 540 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 TXNL1O43396 289 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 RANBP6O60518 1105 aaKnown RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 NPPAP01160 153 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 DLATP10515 647 aaKnown RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 PF4V1P10720 104 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 ALAS1P13196 640 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 PRLRP16471 622 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 ZNF3P17036 446 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 FPR2P25090 351 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 MTIF2P46199 727 aaKnown RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 NR2C2P49116 596 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 RPL11P62913 178 aaKnown RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 DR1Q01658 176 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 SSRP1Q08945 709 aaKnown RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 STRN3Q13033 797 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 PABPC4Q13310 644 aaKnown RBP eCLIP5.8□□□□□ -1.48
VPS41-209ENST00000457055 MPP3Q13368 585 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 GALEQ14376 348 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 TAF12Q16514 161 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 MAJINQ3KP22 176 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 CFAP100Q494V2 611 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 MROH9Q5TGP6 573 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 AADACL4Q5VUY2 407 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 FAM205BPQ63HN1 556 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 CPZQ66K79 652 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 FAM126BQ8IXS8 530 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 FAM9CQ8IZT9 166 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 AVL9Q8NBF6 648 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 PCYOX1LQ8NBM8 494 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 GOT1L1Q8NHS2 421 aaPredicted RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 NPLOC4Q8TAT6 608 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 ATP2A3Q93084 1043 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 LTV1Q96GA3 475 aaPredicted RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 ZNF845Q96IR2 970 aaPredicted RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 CCDC138Q96M89 665 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 CCDC43Q96MW1 224 aaKnown RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 C8orf49Q96NF6 230 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 CATSPER2Q96P56 530 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 MTMR9Q96QG7 549 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 LGR4Q9BXB1 951 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 CARD11Q9BXL7 1154 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 KRTAP3-1Q9BYR8 98 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 C2orf40Q9H1Z8 148 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 NKX2-4Q9H2Z4 354 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 EHD1Q9H4M9 534 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 C8orf33Q9H7E9 229 aaPredicted RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 CYP26B1Q9NR63 512 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 MTRF1LQ9UGC7 380 aaKnown RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 CHORDC1Q9UHD1 332 aaPredicted RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 RASAL2Q9UJF2 1139 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 CROTQ9UKG9 612 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 AGO2Q9UKV8 859 aaKnown RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 C19orf53Q9UNZ5 99 aaPredicted RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 ANKRD6Q9Y2G4 727 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 SPO11Q9Y5K1 396 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 ZFP37Q9Y6Q3 630 aaPredicted RBP5.8□□□□□ -1.48
VPS41-209ENST00000457055 AP1M2Q9Y6Q5 423 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 RTEL1-TNFRSF6BF6WH68 1400 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 SETD5Q9C0A6 1442 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 GLI3P10071 1580 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 KDRP35968 1356 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 KANK1Q14678 1352 aa5.8□□□□□ -1.48
VPS41-209ENST00000457055 MARF1Q9Y4F3 1742 aaKnown RBP5.79□□□□□ -1.48
VPS41-209ENST00000457055 ZNF536O15090 1300 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 ERVK-7P63135 1459 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 GOLGA8AA7E2F4 631 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 MATN3O15232 486 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 RNF113AO15541 343 aaKnown RBP5.79□□□□□ -1.48
VPS41-209ENST00000457055 GPR39O43194 453 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 THAP12O43422 761 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 MGEA5O60502 916 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms