RNA–Protein interactions for RNA: ENST00000454398.1

HLA-DPA3-207, Transcript of major histocompatibility complex, class II, DP alpha 3 (pseudogene), humanhuman

BASIC

Gene HLA-DPA3, Length 229 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA3-207ENST00000454398 HMGB4Q8WW32 186 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 LARP4BQ92615 738 aaKnown RBP6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 CD101Q93033 1021 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 EPSTI1Q96J88 318 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 ZNF560Q96MR9 790 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 PKMYT1Q99640 499 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 LSM14BQ9BX40 385 aaKnown RBP6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 LINC00597Q9H2U6 94 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 PCIF1Q9H4Z3 704 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 PDE11AQ9HCR9 933 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 CD93Q9NPY3 652 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 VPS45Q9NRW7 570 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 TMEM30AQ9NV96 361 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 DDX43Q9NXZ2 648 aaKnown RBP6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 RBAKQ9NYW8 714 aaPredicted RBP6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 SIX4Q9UIU6 781 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 GTF3C4Q9UKN8 822 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 DSEQ9UL01 958 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 ZMIZ1Q9ULJ6 1067 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 AGAP1Q9UPQ3 857 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 C2CD2Q9Y426 696 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 GTF3C3Q9Y5Q9 886 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 SNX9Q9Y5X1 595 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 IGSF10Q6WRI0 2623 aa6.44□□□□□ -1.38
HLA-DPA3-207ENST00000454398 A0A087X0B3 334 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 SPAARA0A1B0GVQ0 90 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 BCLAF3A2AJT9 711 aaKnown RBP6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 VPS37CA5D8V6 355 aaPredicted RBP6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 MYMKA6NI61 221 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 H0YCG3 227 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 HYAL3O43820 417 aaPredicted RBP6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 PPP1R37O75864 691 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 NOL4O94818 638 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 GCNT3O95395 438 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 LMO2P25791 158 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 WEE1P30291 646 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 OPRD1P41143 372 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 SHC2P98077 582 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 GTF2BQ00403 316 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 CYP27A1Q02318 531 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 CEBPZQ03701 1054 aaKnown RBP6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 FAM160A1Q05DH4 1040 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 PDGFRLQ15198 375 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 SF3A1Q15459 793 aaKnown RBP6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 C8orf34Q49A92 452 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 PMS2CLQ68D20 193 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 TMEM92Q6UXU6 159 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 SYT13Q7L8C5 426 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 FILIP1Q7Z7B0 1213 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 SPATA2LQ8IUW3 424 aaPredicted RBP6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 BRSK2Q8IWQ3 736 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 THEM5Q8N1Q8 247 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 SYNPOQ8N3V7 929 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 OR5B17Q8NGF7 314 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 USP33Q8TEY7 942 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 OSCP1Q8WVF1 389 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 KBTBD7Q8WVZ9 684 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 ZCCHC14Q8WYQ9 949 aaKnown RBP6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 PIGKQ92643 395 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 KCNN1Q92952 543 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 ATP2A3Q93084 1043 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 ACDQ96AP0 544 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 P2RY11Q96G91 374 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 CALML4Q96GE6 196 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 TMX3Q96JJ7 454 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 ZSCAN31Q96LW9 406 aaPredicted RBP6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 CLIC6Q96NY7 704 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 SYT15Q9BQS2 421 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 OXCT2Q9BYC2 517 aaPredicted RBP6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 ADAM33Q9BZ11 813 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 TRIM9Q9C026 710 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 DPEP3Q9H4B8 488 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 MRPL44Q9H9J2 332 aaKnown RBP6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 KIF9Q9HAQ2 790 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 CRTAC1Q9NQ79 661 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 KCND2Q9NZV8 630 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 GCNT4Q9P109 453 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 KLK13Q9UKR3 277 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 STK24Q9Y6E0 443 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 PCDH15Q96QU1 1955 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 GCN1Q92616 2671 aaKnown RBP6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 KNL1Q8NG31 2342 aa6.43□□□□□ -1.38
HLA-DPA3-207ENST00000454398 ASXL3Q9C0F0 2248 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 TCRBV21S2A2A0A5A6 115 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 F8VP50 259 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 K7EQS6 105 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 SGK1O00141 431 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 LEFTY2O00292 366 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 CLDN5O00501 218 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 CDX4O14627 284 aaPredicted RBP6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 TRIM24O15164 1050 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 CLSTN1O94985 981 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 KLF8O95600 359 aaPredicted RBP6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 ABL1P00519 1130 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 CFIP05156 583 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 PROS1P07225 676 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 USP17L7P0C7H9 530 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 CSH1P0DML2 217 aa6.42□□□□□ -1.38
HLA-DPA3-207ENST00000454398 CSH2P0DML3 217 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms