RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 MEA1Q16626 185 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 TAF3Q5VWG9 929 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 SPATA31D4Q6ZUB0 917 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 CCDC149Q6ZUS6 474 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 Q7L0L9 218 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 RTL10Q7L3V2 364 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 DEFB123Q8N688 67 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 DDX1Q92499 740 aaKnown RBP16.72■□□□□ 0.27
USP40-206ENST00000443711 PANX2Q96RD6 677 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 AGPAT1Q99943 283 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 DUSP16Q9BY84 665 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 IGFLR1Q9H665 355 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 PCDHGC3Q9UN70 934 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 M0QYV0 167 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 MICAL2O94851 1124 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 EPCAMP16422 314 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 TNFAIP3P21580 790 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 GRIK1P39086 918 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 BCAT1P54687 386 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 RPL10AP62906 217 aaKnown RBP16.71■□□□□ 0.27
USP40-206ENST00000443711 BST2Q10589 180 aaKnown RBP16.71■□□□□ 0.27
USP40-206ENST00000443711 HYAL1Q12794 435 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 MGAT5BQ3V5L5 792 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 TDRD12Q587J7 1177 aaKnown RBP16.71■□□□□ 0.27
USP40-206ENST00000443711 LIN9Q5TKA1 542 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 UBA3Q8TBC4 463 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 SLC20A1Q8WUM9 679 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 CDX2Q99626 313 aaPredicted RBP16.71■□□□□ 0.27
USP40-206ENST00000443711 SEPT5Q99719 369 aaPredicted RBP16.71■□□□□ 0.27
USP40-206ENST00000443711 RHOBTB2Q9BYZ6 727 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 HAUS4Q9H6D7 363 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 DMAP1Q9NPF5 467 aaPredicted RBP16.71■□□□□ 0.27
USP40-206ENST00000443711 KRT82Q9NSB4 513 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 HCFC2Q9Y5Z7 792 aa16.71■□□□□ 0.27
USP40-206ENST00000443711 TRIM66O15016 1216 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 NCK2O43639 380 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 MMEP08473 750 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 SRGAP2BP0DMP2 458 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 NPR3P17342 541 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 CHRNB2P17787 502 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 SSTR3P32745 418 aaPredicted RBP16.7■□□□□ 0.26
USP40-206ENST00000443711 ALDH1A3P47895 512 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 CDK17Q00537 523 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 HGSNATQ68CP4 663 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 LLGL2Q6P1M3 1020 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 DENND1BQ6P3S1 775 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 WDR59Q6PJI9 974 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 VPS36Q86VN1 386 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 TTC30AQ86WT1 665 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 SCN4BQ8IWT1 228 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 TTC9BQ8N6N2 239 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 EFHBQ8N7U6 833 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 MYLIPQ8WY64 445 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 CASP10Q92851 521 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 C8orf48Q96LL4 319 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 SMOQ99835 787 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 UBXN6Q9BZV1 441 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 LHX5Q9H2C1 402 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 CRISPLD1Q9H336 500 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 CSNK1G1Q9HCP0 422 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 MAN1C1Q9NR34 630 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 CEP83Q9Y592 693 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 LAMA3Q16787 3333 aa16.7■□□□□ 0.26
USP40-206ENST00000443711 ZMYND10O75800 440 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 C8AP07357 584 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 CFHP08603 1231 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 SETSIPP0DME0 302 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 ANXA13P27216 316 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 GTF2F1P35269 517 aaKnown RBP eCLIP16.69■□□□□ 0.26
USP40-206ENST00000443711 MAP3K7CLP57077 242 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 FMO1Q01740 532 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 PDE4CQ08493 712 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 PLD1Q13393 1074 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 KCNC3Q14003 757 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 DDR2Q16832 855 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 PKDCCQ504Y2 493 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 PPM1LQ5SGD2 360 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 TRIM72Q6ZMU5 477 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 CLEC20AQ6ZU45 233 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 CCDC186Q7Z3E2 898 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 ZNF571Q7Z3V5 609 aaPredicted RBP16.69■□□□□ 0.26
USP40-206ENST00000443711 TMEM35BQ8NCS4 154 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 SLC7A14Q8TBB6 771 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 PDLIM2Q96JY6 352 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 CEP295NLQ96MC4 621 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 MTMR10Q9NXD2 777 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 YIPF1Q9Y548 306 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 INSL5Q9Y5Q6 135 aa16.69■□□□□ 0.26
USP40-206ENST00000443711 SPDYE4A6NLX3 237 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 F8VP50 259 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 XPO1O14980 1071 aaKnown RBP16.68■□□□□ 0.26
USP40-206ENST00000443711 SOAT2O75908 522 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 BEST1O76090 585 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 LSM8O95777 96 aaKnown RBP16.68■□□□□ 0.26
USP40-206ENST00000443711 LRG1P02750 347 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 GPD2P43304 727 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 CACNA2D1P54289 1103 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 EPHB3P54753 998 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 ADAM15Q13444 863 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 TMEM184AQ6ZMB5 413 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms