RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 MAMDC4Q6UXC1 1216 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 SLC9A9Q8IVB4 645 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 MRRFQ96E11 262 aaKnown RBP8.99□□□□□ -0.97
HPS4-206ENST00000439453 TTC25Q96NG3 672 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 NDNQ99608 321 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 UNC93B1Q9H1C4 597 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 VCX3BQ9H321 246 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 VCX3AQ9NNX9 186 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 LMCD1Q9NZU5 365 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 LARSQ9P2J5 1176 aaKnown RBP8.99□□□□□ -0.97
HPS4-206ENST00000439453 SEL1LQ9UBV2 794 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 ANAPC7Q9UJX3 599 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 WASF2Q9Y6W5 498 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 SNAI1O95863 264 aaPredicted RBP8.99□□□□□ -0.97
HPS4-206ENST00000439453 HMGCRP04035 888 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 CYP1A1P04798 512 aaPredicted RBP8.99□□□□□ -0.97
HPS4-206ENST00000439453 ZCCHC18P0CG32 403 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 CCND3P30281 292 aaPredicted RBP8.99□□□□□ -0.97
HPS4-206ENST00000439453 VAMP7P51809 220 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 NEK3P51956 506 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 MCL1Q07820 350 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 THOC5Q13769 683 aaKnown RBP8.99□□□□□ -0.97
HPS4-206ENST00000439453 ARHGEF6Q15052 776 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 P3H1Q32P28 736 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 DAB2IPQ5VWQ8 1189 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 ANKS1BQ7Z6G8 1248 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 TPH2Q8IWU9 490 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 NCSTNQ92542 709 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 MAK16Q9BXY0 300 aaKnown RBP8.99□□□□□ -0.97
HPS4-206ENST00000439453 MMADHCQ9H3L0 296 aaPredicted RBP8.99□□□□□ -0.97
HPS4-206ENST00000439453 A0A0G2JND7 137 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 WDR91A4D1P6 747 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 ZBTB39O15060 712 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 P4HA2O15460 535 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 RALAP11233 206 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 ADSSP30520 456 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 PIK3CAP42336 1068 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 CCNG2Q16589 344 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 USH1GQ495M9 461 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 HP1BP3Q5SSJ5 553 aaPredicted RBP8.99□□□□□ -0.97
HPS4-206ENST00000439453 PDCD7Q8N8D1 485 aaKnown RBP8.99□□□□□ -0.97
HPS4-206ENST00000439453 KREMEN1Q96MU8 473 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 SPATA16Q9BXB7 569 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 ADAM33Q9BZ11 813 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 VPS37BQ9H9H4 285 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 TAS2R1Q9NYW7 299 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 ANGPTL2Q9UKU9 493 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 SLC4A7Q9Y6M7 1214 aa8.99□□□□□ -0.97
HPS4-206ENST00000439453 UMODL1Q5DID0 1318 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 LAMA2P24043 3122 aaKnown RBP8.98□□□□□ -0.97
HPS4-206ENST00000439453 PIK3CDO00329 1044 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 LGR5O75473 907 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 ADRA1DP25100 572 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 KLRC2P26717 231 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 HSD17B4P51659 736 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 ODR4Q5SWX8 454 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 CAPN12Q6ZSI9 719 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 UBE2Q1Q7Z7E8 422 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 ZNF467Q7Z7K2 595 aaPredicted RBP8.98□□□□□ -0.97
HPS4-206ENST00000439453 TRIM55Q9BYV6 548 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 PCIF1Q9H4Z3 704 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 ZWILCHQ9H900 591 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 SH3BP1Q9Y3L3 701 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 A8MXQ7 604 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 PYGBP11216 843 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 CCL5P13501 91 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 ZBTB16Q05516 673 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 KLF1Q13351 362 aaPredicted RBP8.98□□□□□ -0.97
HPS4-206ENST00000439453 FASTKD3Q14CZ7 662 aaKnown RBP8.98□□□□□ -0.97
HPS4-206ENST00000439453 WDR78Q5VTH9 848 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 LHX8Q68G74 356 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 ACAD10Q6JQN1 1059 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 GSTA5Q7RTV2 222 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 KCTD17Q8N5Z5 321 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 DDX27Q96GQ7 796 aaKnown RBP8.98□□□□□ -0.97
HPS4-206ENST00000439453 PRR11Q96HE9 360 aaPredicted RBP8.98□□□□□ -0.97
HPS4-206ENST00000439453 DYDC2Q96IM9 177 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 OCEL1Q9H607 264 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 KIAA0100Q14667 2235 aaKnown RBP8.98□□□□□ -0.97
HPS4-206ENST00000439453 DNAJC6O75061 913 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 ZNF865P0CJ78 1059 aaPredicted RBP8.98□□□□□ -0.97
HPS4-206ENST00000439453 ESRRAP11474 423 aaPredicted RBP8.98□□□□□ -0.97
HPS4-206ENST00000439453 CYP11B1P15538 503 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 KRT4P19013 534 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 AMPD1P23109 780 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 ARFIP2P53365 341 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 RTP1P59025 263 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 SEPT7Q16181 437 aaKnown RBP8.98□□□□□ -0.97
HPS4-206ENST00000439453 PPM1KQ8N3J5 372 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 CYP2W1Q8TAV3 490 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 TUBGCP5Q96RT8 1024 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 HSD17B14Q9BPX1 270 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 CCDC28BQ9BUN5 200 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 CRISPLD2Q9H0B8 497 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 FBXO40Q9UH90 709 aa8.98□□□□□ -0.97
HPS4-206ENST00000439453 SLITRK3O94933 977 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 EDNRBP24530 442 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 SERPINB3P29508 390 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 PGM1P36871 562 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 SREBF1P36956 1147 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms