RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 PEX19P40855 299 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 PRKCIP41743 596 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 ALDH7A1P49419 539 aaKnown RBP12.82□□□□□ -0.36
TCOF1-205ENST00000439160 DRP2Q13474 957 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 MAPRE1Q15691 268 aaKnown RBP12.82□□□□□ -0.36
TCOF1-205ENST00000439160 HABP4Q5JVS0 413 aaKnown RBP12.82□□□□□ -0.36
TCOF1-205ENST00000439160 CREG2Q8IUH2 290 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 PPWD1Q96BP3 646 aaKnown RBP12.82□□□□□ -0.36
TCOF1-205ENST00000439160 SYT17Q9BSW7 474 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 RGPD2P0DJD1 1756 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 NFKBIEO00221 500 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 ONECUT3O60422 494 aaPredicted RBP12.82□□□□□ -0.36
TCOF1-205ENST00000439160 EGFRP00533 1210 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 IRF1P10914 325 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 LSP1P33241 339 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 YWHAHQ04917 246 aaPredicted RBP12.82□□□□□ -0.36
TCOF1-205ENST00000439160 LBX2Q6XYB7 198 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 SLC9A9Q8IVB4 645 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 SCUBE3Q8IX30 993 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 OR5B17Q8NGF7 314 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 CDC26Q8NHZ8 85 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 KRT35Q92764 455 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 MTG1Q9BT17 334 aaPredicted RBP12.82□□□□□ -0.36
TCOF1-205ENST00000439160 TCHHQ07283 1943 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 ADAMTSL3P82987 1691 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 GYG2O15488 501 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 MAFO75444 373 aaPredicted RBP12.82□□□□□ -0.36
TCOF1-205ENST00000439160 RECQL4O94761 1208 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 NNMTP40261 264 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 IRAK1P51617 712 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 PTK7Q13308 1070 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 TAF2Q6P1X5 1199 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 ELMSAN1Q6PJG2 1045 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 LRGUKQ96M69 825 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 DDX43Q9NXZ2 648 aaKnown RBP12.82□□□□□ -0.36
TCOF1-205ENST00000439160 LMCD1Q9NZU5 365 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 EIF3HO15372 352 aaKnown RBP eCLIP12.82□□□□□ -0.365e-6■■■□□ 14.9
TCOF1-205ENST00000439160 B4GALT5O43286 388 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 USP2O75604 605 aaPredicted RBP12.82□□□□□ -0.36
TCOF1-205ENST00000439160 SLC35G1Q2M3R5 365 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 TAS2R42Q7RTR8 314 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 TMEM134Q9H6X4 195 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 CASZ1Q86V15 1759 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 IGLV3-22A0A075B6J6 115 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 FAM47DPA6NHR8 397 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 E5RI56 91 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 H0Y3Z8 333 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 TRPA1O75762 1119 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 HAUS5O94927 633 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 PGK1P00558 417 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 ATXN8OSP0DMR3 200 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 SKIP12755 728 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 ETFBP38117 255 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 CLK2P49760 499 aaKnown RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 GPR142Q7Z601 462 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 EPS8L3Q8TE67 593 aaKnown RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 SH3TC2Q8TF17 1288 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 XPO6Q96QU8 1125 aaKnown RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 TUBB6Q9BUF5 446 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 TMEM106CQ9BVX2 250 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 EPN3Q9H201 632 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 PCMTD2Q9NV79 361 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 NID2Q14112 1375 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 PDE2AO00408 941 aaPredicted RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 NOL3O60936 208 aaKnown RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 CHEK2O96017 543 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 MAP7Q14244 749 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 BMT2Q1RMZ1 405 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 EEF1DP3Q658K8 133 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 FRA10AC1Q70Z53 315 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 SLC25A41Q8N5S1 370 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 TFB1MQ8WVM0 346 aaKnown RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 DDX23Q9BUQ8 820 aaKnown RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 ETNK1Q9HBU6 452 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 FAM8A1Q9UBU6 413 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 MARCOQ9UEW3 520 aaPredicted RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 AP4E1Q9UPM8 1137 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 SMG5Q9UPR3 1016 aaKnown RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 PLIN4Q96Q06 1357 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 NFICP08651 508 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 EIF4BP23588 611 aaKnown RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 TKTL1P51854 596 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 PTENP60484 403 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 NFIL3Q16649 462 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 AGBL2Q5U5Z8 902 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 TDRD10Q5VZ19 366 aaKnown RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 ZC3H15Q8WU90 426 aaKnown RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 ZNF669Q96BR6 464 aaPredicted RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 TMEM169Q96HH4 297 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 GAD1Q99259 594 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 PMPCBO75439 489 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 FARP2O94887 1054 aaPredicted RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 MCL1Q07820 350 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 ACTN3Q08043 901 aaPredicted RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 BST2Q10589 180 aaKnown RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 SLFN11Q7Z7L1 901 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 ZNF410Q86VK4 478 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 LNX1Q8TBB1 728 aaPredicted RBP12.81□□□□□ -0.36
TCOF1-205ENST00000439160 CDT1Q9H211 546 aa12.81□□□□□ -0.36
TCOF1-205ENST00000439160 SUDS3Q9H7L9 328 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms