RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 CRACR2AQ9BSW2 395 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 RPP25Q9BUL9 199 aaKnown RBP19.83■□□□□ 0.77
SHH-203ENST00000435425 DNAI2Q9GZS0 605 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 IL21Q9HBE4 155 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 GDE1Q9NZC3 331 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 IGSF9Q9P2J2 1179 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 NFE2L3Q9Y4A8 694 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 OBSL1O75147 1896 aa19.83■□□□□ 0.76
SHH-203ENST00000435425 NCOR1O75376 2440 aa19.83■□□□□ 0.76
SHH-203ENST00000435425 TTC28Q96AY4 2481 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 FAM86C2PA6NEL3 165 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 AP1G2O75843 785 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 MICAL2O94851 1124 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 FGF19O95750 216 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 PRKCSHP14314 528 aaPredicted RBP19.82■□□□□ 0.76
SHH-203ENST00000435425 TYRO3Q06418 890 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 IFRD2Q12894 506 aaPredicted RBP19.82■□□□□ 0.76
SHH-203ENST00000435425 TDGQ13569 410 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 HTR4Q13639 388 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 ARHGAP15Q53QZ3 475 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 GPR158Q5T848 1215 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 MTSS1LQ765P7 747 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 RRAGAQ7L523 313 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 FUKQ8N0W3 1084 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 LMO3Q8TAP4 145 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 ENOX1Q8TC92 643 aaKnown RBP19.82■□□□□ 0.76
SHH-203ENST00000435425 HEXIM2Q96MH2 286 aaKnown RBP19.82■□□□□ 0.76
SHH-203ENST00000435425 KCNK16Q96T55 309 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 KXD1Q9BQD3 176 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 INTS2Q9H0H0 1204 aaKnown RBP19.82■□□□□ 0.76
SHH-203ENST00000435425 TMEM30AQ9NV96 361 aa19.82■□□□□ 0.76
SHH-203ENST00000435425 ZNF638Q14966 1978 aaKnown RBP19.82■□□□□ 0.76
SHH-203ENST00000435425 KCNJ18B7U540 433 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 ANHXE9PGG2 379 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 PES1O00541 588 aaKnown RBP19.81■□□□□ 0.76
SHH-203ENST00000435425 NOL4O94818 638 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 CDC25CP30307 473 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 YWHAEP62258 255 aaKnown RBP19.81■□□□□ 0.76
SHH-203ENST00000435425 KCNJ12Q14500 433 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 MAN2A1Q16706 1144 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 FAM78AQ5JUQ0 283 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 ARHGEF19Q8IW93 802 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 SLC44A3Q8N4M1 653 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 TTC39CQ8N584 583 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 EDAQ92838 391 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 KAT5Q92993 513 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 CYFIP2Q96F07 1278 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 SMARCD1Q96GM5 515 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 TMEM176AQ96HP8 235 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 SPATA17Q96L03 361 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 C8orf48Q96LL4 319 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 TUBGCP2Q9BSJ2 902 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 KRT82Q9NSB4 513 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 GCNT4Q9P109 453 aa19.81■□□□□ 0.76
SHH-203ENST00000435425 NARSO43776 548 aaKnown RBP19.8■□□□□ 0.76
SHH-203ENST00000435425 F11P03951 625 aa19.8■□□□□ 0.76
SHH-203ENST00000435425 PTMSP20962 102 aa19.8■□□□□ 0.76
SHH-203ENST00000435425 TBXAS1P24557 533 aaPredicted RBP19.8■□□□□ 0.76
SHH-203ENST00000435425 RAD23BP54727 409 aa19.8■□□□□ 0.76
SHH-203ENST00000435425 USP46P62068 366 aa19.8■□□□□ 0.76
SHH-203ENST00000435425 KLHL40Q2TBA0 621 aa19.8■□□□□ 0.76
SHH-203ENST00000435425 TANGO2Q6ICL3 276 aa19.8■□□□□ 0.76
SHH-203ENST00000435425 DENND5BQ6ZUT9 1274 aa19.8■□□□□ 0.76
SHH-203ENST00000435425 SLC4A11Q8NBS3 891 aa19.8■□□□□ 0.76
SHH-203ENST00000435425 ZSCAN18Q8TBC5 510 aaPredicted RBP19.8■□□□□ 0.76
SHH-203ENST00000435425 NXPE3Q969Y0 559 aa19.8■□□□□ 0.76
SHH-203ENST00000435425 UXTQ9UBK9 157 aaPredicted RBP19.8■□□□□ 0.76
SHH-203ENST00000435425 PCDHB4Q9Y5E5 795 aa19.8■□□□□ 0.76
SHH-203ENST00000435425 BEST1O76090 585 aa19.79■□□□□ 0.76
SHH-203ENST00000435425 SLC9A1P19634 815 aa19.79■□□□□ 0.76
SHH-203ENST00000435425 MAP3K7CLP57077 242 aa19.79■□□□□ 0.76
SHH-203ENST00000435425 ANO6Q4KMQ2 910 aa19.79■□□□□ 0.76
SHH-203ENST00000435425 VWA3BQ502W6 1294 aa19.79■□□□□ 0.76
SHH-203ENST00000435425 PPP1R26Q5T8A7 1209 aaPredicted RBP19.79■□□□□ 0.76
SHH-203ENST00000435425 GBP6Q6ZN66 633 aa19.79■□□□□ 0.76
SHH-203ENST00000435425 TMEM150AQ86TG1 271 aa19.79■□□□□ 0.76
SHH-203ENST00000435425 JAKMIP2Q96AA8 810 aa19.79■□□□□ 0.76
SHH-203ENST00000435425 ASB16Q96NS5 453 aa19.79■□□□□ 0.76
SHH-203ENST00000435425 HNRNPABQ99729 332 aaKnown RBP19.79■□□□□ 0.76
SHH-203ENST00000435425 PLA2G2FQ9BZM2 168 aa19.79■□□□□ 0.76
SHH-203ENST00000435425 GPR88Q9GZN0 384 aa19.79■□□□□ 0.76
SHH-203ENST00000435425 DMAP1Q9NPF5 467 aaPredicted RBP19.79■□□□□ 0.76
SHH-203ENST00000435425 FANCLQ9NW38 375 aa19.79■□□□□ 0.76
SHH-203ENST00000435425 FAM200BP0CF97 657 aa19.78■□□□□ 0.76
SHH-203ENST00000435425 CD19P15391 556 aa19.78■□□□□ 0.76
SHH-203ENST00000435425 VIPR2P41587 438 aa19.78■□□□□ 0.76
SHH-203ENST00000435425 TCP11X2Q5H9J9 407 aa19.78■□□□□ 0.76
SHH-203ENST00000435425 PHLDB3Q6NSJ2 640 aa19.78■□□□□ 0.76
SHH-203ENST00000435425 TMEM270Q6UE05 265 aa19.78■□□□□ 0.76
SHH-203ENST00000435425 TRIM67Q6ZTA4 783 aa19.78■□□□□ 0.76
SHH-203ENST00000435425 UBALD2Q8IYN6 164 aa19.78■□□□□ 0.76
SHH-203ENST00000435425 NUP93Q8N1F7 819 aa19.78■□□□□ 0.76
SHH-203ENST00000435425 MAB21L3Q8N8X9 362 aa19.78■□□□□ 0.76
SHH-203ENST00000435425 MRPS31Q92665 395 aaKnown RBP19.78■□□□□ 0.76
SHH-203ENST00000435425 SMARCD2Q92925 531 aa19.78■□□□□ 0.76
SHH-203ENST00000435425 TRMT2BQ96GJ1 504 aaKnown RBP19.78■□□□□ 0.76
SHH-203ENST00000435425 MYRFLQ96LU7 910 aa19.78■□□□□ 0.76
SHH-203ENST00000435425 SMOQ99835 787 aa19.78■□□□□ 0.76
SHH-203ENST00000435425 NDST4Q9H3R1 872 aa19.78■□□□□ 0.76
SHH-203ENST00000435425 TASP1Q9H6P5 420 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms