RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 CDCA2Q69YH5 1023 aaPredicted RBP11.84□□□□□ -0.51
USP4-205ENST00000431357 CAPN12Q6ZSI9 719 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 C3orf62Q6ZUJ4 267 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 OTOAQ7RTW8 1153 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 ZBTB33Q86T24 672 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 CCDC125Q86Z20 511 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 ZNF526Q8TF50 670 aaPredicted RBP11.84□□□□□ -0.51
USP4-205ENST00000431357 PRPF31Q8WWY3 499 aaKnown RBP11.84□□□□□ -0.51
USP4-205ENST00000431357 TFAP2BQ92481 460 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 SPOCK2Q92563 424 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 ANKRD36BP1Q96IX9 119 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 PAFAH2Q99487 392 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 SSC5DA1L4H1 1573 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 TNS1Q9HBL0 1735 aaKnown RBP11.84□□□□□ -0.51
USP4-205ENST00000431357 APOC4-APOC2K7ER74 178 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 HGSO14964 777 aaPredicted RBP11.84□□□□□ -0.51
USP4-205ENST00000431357 APOC2P02655 101 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 INHBEP58166 350 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 TFDP1Q14186 410 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 MXD4Q14582 209 aaPredicted RBP11.84□□□□□ -0.51
USP4-205ENST00000431357 MAPK6Q16659 721 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 CYP4A22Q5TCH4 519 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 DENND1BQ6P3S1 775 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 RHPN2Q8IUC4 686 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 FBXO36Q8NEA4 188 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 CFAP61Q8NHU2 1237 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 UTP4Q969X6 686 aaKnown RBP11.84□□□□□ -0.51
USP4-205ENST00000431357 ACSF2Q96CM8 615 aaPredicted RBP11.84□□□□□ -0.51
USP4-205ENST00000431357 THOC1Q96FV9 657 aaKnown RBP11.84□□□□□ -0.51
USP4-205ENST00000431357 WRNIP1Q96S55 665 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 CYTH2Q99418 400 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 PCYT2Q99447 389 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 ZWILCHQ9H900 591 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 SPATS2LQ9NUQ6 558 aaKnown RBP11.84□□□□□ -0.51
USP4-205ENST00000431357 LNPEPQ9UIQ6 1025 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 HAO1Q9UJM8 370 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 IQANK1A0A1B0GTG1 560 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 GOLGA8SH3BPF8 625 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 GOLGA8MH3BSY2 632 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 MCF2LO15068 1137 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 B4GALT4O60513 344 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 SPAG6O75602 509 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 FARP2O94887 1054 aaPredicted RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 PRKCBP05771 671 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 TARSP26639 723 aaKnown RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 PTPN4P29074 926 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 SSTR1P30872 391 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 STIP1P31948 543 aaKnown RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 ASPAP45381 313 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 PSMC1P62191 440 aaKnown RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 CBLBQ13191 982 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 NAA25Q14CX7 972 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 PTPN20Q4JDL3 420 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 FNBP1LQ5T0N5 605 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 ANKRD22Q5VYY1 191 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 NLRP9Q7RTR0 991 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 BANPQ8N9N5 519 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 ARMC2Q8NEN0 867 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 CMASQ8NFW8 434 aaPredicted RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 FBXO41Q8TF61 875 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 MZB1Q8WU39 189 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 SEPT1Q8WYJ6 367 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 MRRFQ96E11 262 aaKnown RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 ZFP69BQ9UJL9 534 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 SPDYE16A6NNV3 312 aaPredicted RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 NEBLO76041 1014 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 LUC7L3O95232 432 aaKnown RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 EGFRP00533 1210 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 LMNAP02545 664 aaKnown RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 HOXC6P09630 235 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 T-ENOLP0DO92 83 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 TGFB3P10600 412 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 CD19P15391 556 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 UBA1P22314 1058 aaKnown RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 DYNLT1P63172 113 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 TFAMQ00059 246 aaKnown RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 PDCD2Q16342 344 aaPredicted RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 RFX6Q8HWS3 928 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 KCTD6Q8NC69 237 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 JOSD2Q8TAC2 188 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 DCAKDQ8WVC6 231 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 SLC7A6OSQ96CW6 309 aaPredicted RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 XYLT2Q9H1B5 865 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 TLE6Q9H808 572 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 RSAD1Q9HA92 442 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 RNPEPL1Q9HAU8 725 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 SLC5A4Q9NY91 659 aa11.83□□□□□ -0.52
USP4-205ENST00000431357 XPO7Q9UIA9 1087 aaKnown RBP11.83□□□□□ -0.52
USP4-205ENST00000431357 ABLIM1O14639 778 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 LIN7AO14910 233 aaPredicted RBP11.82□□□□□ -0.52
USP4-205ENST00000431357 RNF8O76064 485 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 IL18RAPO95256 599 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 TGDSO95455 350 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 MT-ND3P03897 115 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 CALB2P22676 271 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 IL1R2P27930 398 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 GDF10P55107 478 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 EIF3EP60228 445 aaKnown RBP11.82□□□□□ -0.52
USP4-205ENST00000431357 DPYSL3Q14195 570 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms