RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 RNF44Q7L0R7 432 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 CMTM4Q8IZR5 234 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 KLHL36Q8N4N3 616 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 VGLL2Q8N8G2 317 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 FAM71BQ8TC56 605 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 FNIP1Q8TF40 1166 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 MUL1Q969V5 352 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 YTHDC1Q96MU7 727 aaKnown RBP4.74□□□□□ -1.65
HMGB3-203ENST00000430118 NOX5Q96PH1 765 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 C1orf43Q9BWL3 253 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 MAGEB5Q9BZ81 275 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 MAGEH1Q9H213 219 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 EPB41L4BQ9H329 900 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 ING3Q9NXR8 418 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 TMEM98Q9Y2Y6 226 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 UBR3Q6ZT12 1888 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 RTL1A6NKG5 1358 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 C4AP0C0L4 1744 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 TAF1LQ8IZX4 1826 aa4.74□□□□□ -1.65
HMGB3-203ENST00000430118 TIAM2Q8IVF5 1701 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 TOGARAM1Q9Y4F4 1720 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 C9orf118A6NHY6 69 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 B5MCH6 92 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 PYCARD-AS1I3L0S3 204 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 ACKR2O00590 384 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 EPB41L2O43491 1005 aaKnown RBP4.73□□□□□ -1.65
HMGB3-203ENST00000430118 KCNQ3O43525 872 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 HAUS5O94927 633 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 AMHP03971 560 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 TXNP10599 105 aaKnown RBP4.73□□□□□ -1.65
HMGB3-203ENST00000430118 CYP2C9P11712 490 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 XRCC6P12956 609 aaKnown RBP eCLIP4.73□□□□□ -1.65
HMGB3-203ENST00000430118 ATP5JP18859 108 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 HDCP19113 662 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 FPR1P21462 350 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 MAPK9P45984 424 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 RGS19P49795 217 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 COPAP53621 1224 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 TMF1P82094 1093 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 TCF15Q12870 199 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 HYIQ5T013 277 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 AFMIDQ63HM1 303 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 FBXO38Q6PIJ6 1188 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 MPZL3Q6UWV2 235 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 USP30Q70CQ3 517 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 LARP4Q71RC2 724 aaKnown RBP eCLIP4.73□□□□□ -1.65
HMGB3-203ENST00000430118 FRMD5Q7Z6J6 570 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 KRTAP1-3Q8IUG1 177 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 YAF2Q8IY57 180 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 CELF5Q8N6W0 485 aaKnown RBP4.73□□□□□ -1.65
HMGB3-203ENST00000430118 CCDC150Q8NCX0 1101 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 SCAMP4Q969E2 229 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 SKA1Q96BD8 255 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 BORCS6Q96GS4 357 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 UBXN10Q96LJ8 280 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 ZSCAN31Q96LW9 406 aaPredicted RBP4.73□□□□□ -1.65
HMGB3-203ENST00000430118 HEPHQ9BQS7 1158 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 MCOLN1Q9GZU1 580 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 DHX36Q9H2U1 1008 aaKnown RBP4.73□□□□□ -1.65
HMGB3-203ENST00000430118 LDAHQ9H6V9 325 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 BARX1Q9HBU1 254 aaPredicted RBP4.73□□□□□ -1.65
HMGB3-203ENST00000430118 RASSF1Q9NS23 344 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 MAP3K20Q9NYL2 800 aaKnown RBP4.73□□□□□ -1.65
HMGB3-203ENST00000430118 ZNF212Q9UDV6 495 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.73□□□□□ -1.65
HMGB3-203ENST00000430118 ADAM29Q9UKF5 820 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 CA14Q9ULX7 337 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 CAPN11Q9UMQ6 739 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 MAN2B2Q9Y2E5 1009 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 RBM8AQ9Y5S9 174 aaKnown RBP4.73□□□□□ -1.65
HMGB3-203ENST00000430118 PMF1-BGLAPU3KQ54 211 aa4.73□□□□□ -1.65
HMGB3-203ENST00000430118 N4BP2Q86UW6 1770 aaPredicted RBP4.73□□□□□ -1.65
HMGB3-203ENST00000430118 EDC4Q6P2E9 1401 aaKnown RBP4.72□□□□□ -1.65
HMGB3-203ENST00000430118 MEGF6O75095 1541 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 KIAA1551Q9HCM1 1747 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 A0A0G2JLW4 131 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 MYOCOSA0A1B0GUC4 107 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 LGALS16A8MUM7 142 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.72□□□□□ -1.65
HMGB3-203ENST00000430118 PODXLO00592 558 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 ARHGAP6O43182 974 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 CCP110O43303 1012 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 GJB1P08034 283 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 IL1R1P14778 569 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 DPEP1P16444 411 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 JUNBP17275 347 aaPredicted RBP4.72□□□□□ -1.65
HMGB3-203ENST00000430118 IL1R2P27930 398 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 CSF2RBP32927 897 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 RFC4P35249 363 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 LBX1P52954 281 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 GP2P55259 537 aaKnown RBP4.72□□□□□ -1.65
HMGB3-203ENST00000430118 BPIFB4P59827 614 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 ADAM8P78325 824 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 APBA1Q02410 837 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 HGFACQ04756 655 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 MRPL49Q13405 166 aaKnown RBP4.72□□□□□ -1.65
HMGB3-203ENST00000430118 SIM2Q14190 667 aaPredicted RBP4.72□□□□□ -1.65
HMGB3-203ENST00000430118 RAB30Q15771 203 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 FBXO47Q5MNV8 452 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 FAM26FQ5R3K3 315 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms