RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 POLR3BQ9NW08 1133 aaPredicted RBP15.54■□□□□ 0.08
SDC1-204ENST00000429035 DUS2Q9NX74 493 aaKnown RBP15.54■□□□□ 0.08
SDC1-204ENST00000429035 GDAP2Q9NXN4 497 aa15.54■□□□□ 0.08
SDC1-204ENST00000429035 MYH10P35580 1976 aa15.54■□□□□ 0.08
SDC1-204ENST00000429035 K7ELQ4 463 aaPredicted RBP15.53■□□□□ 0.08
SDC1-204ENST00000429035 KIAA0391O15091 583 aaKnown RBP15.53■□□□□ 0.08
SDC1-204ENST00000429035 AXIN1O15169 862 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 LRP3O75074 770 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 RPP40O75818 363 aaKnown RBP15.53■□□□□ 0.08
SDC1-204ENST00000429035 PDGFRBP09619 1106 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 BDNFP23560 247 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 GRIK1P39086 918 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 NASPP49321 788 aaPredicted RBP15.53■□□□□ 0.08
SDC1-204ENST00000429035 CYP2J2P51589 502 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 IFRD2Q12894 506 aaPredicted RBP15.53■□□□□ 0.08
SDC1-204ENST00000429035 USP4Q13107 963 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 ZNF268Q14587 947 aaPredicted RBP15.53■□□□□ 0.08
SDC1-204ENST00000429035 SURF1Q15526 300 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 ZNF77Q15935 545 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 SPATA18Q8TC71 538 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 EXOC4Q96A65 974 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 TRMT2BQ96GJ1 504 aaKnown RBP15.53■□□□□ 0.08
SDC1-204ENST00000429035 INTS4Q96HW7 963 aaKnown RBP15.53■□□□□ 0.08
SDC1-204ENST00000429035 FUBP3Q96I24 572 aaKnown RBP eCLIP15.53■□□□□ 0.08
SDC1-204ENST00000429035 FNBP1Q96RU3 617 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 SLC22A12Q96S37 553 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 CYP2S1Q96SQ9 504 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 P2RY13Q9BPV8 354 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 LRRC27Q9C0I9 530 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 TFIP11Q9UBB9 837 aaKnown RBP15.53■□□□□ 0.08
SDC1-204ENST00000429035 MAGEC2Q9UBF1 373 aaPredicted RBP15.53■□□□□ 0.08
SDC1-204ENST00000429035 CDH9Q9ULB4 789 aa15.53■□□□□ 0.08
SDC1-204ENST00000429035 C2orf78A6NCI8 922 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 CLIC2O15247 247 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 ATG13O75143 517 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 TNNI1P19237 187 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 LMO2P25791 158 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 GJA4P35212 333 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 DUOXA2Q1HG44 320 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 CFAP221Q4G0U5 840 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 MDH1BQ5I0G3 518 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 FAM26FQ5R3K3 315 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 WDR49Q8IV35 697 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 C12orf50Q8NA57 414 aaPredicted RBP15.52■□□□□ 0.08
SDC1-204ENST00000429035 LINC00301Q8NCQ3 95 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 RPLP0P6Q8NHW5 317 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 SH3RF2Q8TEC5 729 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 OSCP1Q8WVF1 389 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 KBTBD7Q8WVZ9 684 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 ATP2A3Q93084 1043 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 ZNF396Q96N95 335 aaPredicted RBP15.52■□□□□ 0.08
SDC1-204ENST00000429035 TRIM9Q9C026 710 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 ARRDC1-AS1Q9H2J1 176 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 SNX25Q9H3E2 840 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 ECT2Q9H8V3 914 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 CRTAC1Q9NQ79 661 aa15.52■□□□□ 0.08
SDC1-204ENST00000429035 TRDMT1O14717 391 aaKnown RBP15.51■□□□□ 0.07
SDC1-204ENST00000429035 GABRDO14764 452 aa15.51■□□□□ 0.07
SDC1-204ENST00000429035 EIF3DO15371 548 aaKnown RBP eCLIP15.51■□□□□ 0.078e-8■■■■□ 24.5
SDC1-204ENST00000429035 GDF9O60383 454 aa15.51■□□□□ 0.07
SDC1-204ENST00000429035 ABL1P00519 1130 aa15.51■□□□□ 0.07
SDC1-204ENST00000429035 DRD1P21728 446 aa15.51■□□□□ 0.07
SDC1-204ENST00000429035 TNNC1P63316 161 aa15.51■□□□□ 0.07
SDC1-204ENST00000429035 AMPD3Q01432 767 aa15.51■□□□□ 0.07
SDC1-204ENST00000429035 MAPRE1Q15691 268 aaKnown RBP15.51■□□□□ 0.07
SDC1-204ENST00000429035 CSRP2Q16527 193 aa15.51■□□□□ 0.07
SDC1-204ENST00000429035 HS2ST1Q7LGA3 356 aa15.51■□□□□ 0.07
SDC1-204ENST00000429035 OR6B3Q8NGW1 331 aa15.51■□□□□ 0.07
SDC1-204ENST00000429035 GAB3Q8WWW8 586 aa15.51■□□□□ 0.07
SDC1-204ENST00000429035 CD101Q93033 1021 aa15.51■□□□□ 0.07
SDC1-204ENST00000429035 CCDC127Q96BQ5 260 aa15.51■□□□□ 0.07
SDC1-204ENST00000429035 MYRFLQ96LU7 910 aa15.51■□□□□ 0.07
SDC1-204ENST00000429035 FBRSL1Q9HCM7 1045 aaKnown RBP15.51■□□□□ 0.07
SDC1-204ENST00000429035 AGPAT3Q9NRZ7 376 aa15.51■□□□□ 0.07
SDC1-204ENST00000429035 MORC2Q9Y6X9 1032 aaPredicted RBP15.51■□□□□ 0.07
SDC1-204ENST00000429035 MYOFQ9NZM1 2061 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 SLC30A4O14863 429 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 HDCP19113 662 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 WARSP23381 471 aaKnown RBP15.5■□□□□ 0.07
SDC1-204ENST00000429035 CASP1P29466 404 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 MAGEA11P43364 429 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 GALK1P51570 392 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 SEC13P55735 322 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 SF3A2Q15428 464 aaKnown RBP15.5■□□□□ 0.07
SDC1-204ENST00000429035 E2F4Q16254 413 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 SNRNP35Q16560 246 aaKnown RBP15.5■□□□□ 0.07
SDC1-204ENST00000429035 PPM1JQ5JR12 505 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 IL31Q6EBC2 164 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 FAM171BQ6P995 826 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 VSTM1Q6UX27 236 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 DENND5BQ6ZUT9 1274 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 DPH6Q7L8W6 267 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 TRAPPC11Q7Z392 1133 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 CACNA2D4Q7Z3S7 1137 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 KBTBD6Q86V97 674 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 PCED1BQ96HM7 432 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 CGRRF1Q99675 332 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 MRPL45Q9BRJ2 306 aaKnown RBP15.5■□□□□ 0.07
SDC1-204ENST00000429035 BLZF1Q9H2G9 400 aa15.5■□□□□ 0.07
SDC1-204ENST00000429035 CUEDC2Q9H467 287 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms