RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 PRKAR2AP13861 404 aaKnown RBP11.23□□□□□ -0.61
CUX1-205ENST00000425244 IBSPP21815 317 aaPredicted RBP11.23□□□□□ -0.61
CUX1-205ENST00000425244 KLRC2P26717 231 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 CCND3P30281 292 aaPredicted RBP11.23□□□□□ -0.61
CUX1-205ENST00000425244 STX2P32856 288 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 MAGEA4P43358 317 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 CPT1AP50416 773 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 ZNF132P52740 706 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 ZNF200P98182 395 aaPredicted RBP11.23□□□□□ -0.61
CUX1-205ENST00000425244 DUOXA2Q1HG44 320 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 SMTNL2Q2TAL5 461 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 ZNF699Q32M78 642 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 ERICH1Q86X53 443 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 WDR49Q8IV35 697 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 RAET1EQ8TD07 263 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 TCP11Q8WWU5 503 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 TFAP2BQ92481 460 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 ADAM33Q9BZ11 813 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 ZWILCHQ9H900 591 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 CD248Q9HCU0 757 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 ABCF3Q9NUQ8 709 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 CNTN6Q9UQ52 1028 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 ZNF236Q9UL36 1845 aa11.23□□□□□ -0.61
CUX1-205ENST00000425244 EXOC1LA0A1B0GW35 172 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 GOLGA8MH3BSY2 632 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 MSCO60682 206 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 RAP1GAPP47736 663 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 MXD4Q14582 209 aaPredicted RBP11.22□□□□□ -0.61
CUX1-205ENST00000425244 ITIH4Q14624 930 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 MAPK6Q16659 721 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 CXCL17Q6UXB2 119 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 ZPBP2Q6X784 338 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 SPOCD1Q6ZMY3 1216 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 ZBTB8OSQ8IWT0 167 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 TMEM130Q8N3G9 435 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 NLRP7Q8WX94 980 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 TMEM121Q9BTD3 319 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 CCDC134Q9H6E4 229 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 C10orf88Q9H8K7 445 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 NKIRAS1Q9NYS0 192 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 SAE1Q9UBE0 346 aaPredicted RBP11.22□□□□□ -0.61
CUX1-205ENST00000425244 A0A087WZ62 844 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 POC1B-GALNT4F8VUJ3 575 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 SGK1O00141 431 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 B4GALT5O43286 388 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 CDH16O75309 829 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 RASSF9O75901 435 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 EFNA5P52803 228 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 FASTKD3Q14CZ7 662 aaKnown RBP11.22□□□□□ -0.61
CUX1-205ENST00000425244 LACTB2Q53H82 288 aaPredicted RBP11.22□□□□□ -0.61
CUX1-205ENST00000425244 KCNT1Q5JUK3 1230 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 ZNF484Q5JVG2 852 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 HIBCHQ6NVY1 386 aaPredicted RBP11.22□□□□□ -0.61
CUX1-205ENST00000425244 CYB5D1Q6P9G0 228 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 MTHFD1LQ6UB35 978 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 TRPM8Q7Z2W7 1104 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 ZCCHC9Q8N567 271 aaKnown RBP11.22□□□□□ -0.61
CUX1-205ENST00000425244 FDXACB1Q9BRP7 624 aaPredicted RBP11.22□□□□□ -0.61
CUX1-205ENST00000425244 MINDY3Q9H8M7 445 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 VPS37BQ9H9H4 285 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 POLIQ9UNA4 740 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 RASA4BC9J798 803 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 GPR25O00155 361 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 OGTO15294 1046 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 RASA4O43374 803 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 SNX3O60493 162 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 SPAG7O75391 227 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 SMIM10L2AP0DMW4 78 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 SMIM10L2BP0DMW5 78 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 PECAM1P16284 738 aaPredicted RBP11.22□□□□□ -0.61
CUX1-205ENST00000425244 PSMA2P25787 234 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 LMNB2Q03252 620 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 MTM1Q13496 603 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 MFSD10Q14728 455 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 KIZQ2M2Z5 673 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 SGSM1Q2NKQ1 1148 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 FAM47CQ5HY64 1035 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 PPP1R2P3Q6NXS1 205 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 DENND1BQ6P3S1 775 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 DPH6Q7L8W6 267 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 FUKQ8N0W3 1084 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 ZNF296Q8WUU4 475 aaPredicted RBP11.22□□□□□ -0.61
CUX1-205ENST00000425244 P3H4Q92791 437 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 TGS1Q96RS0 853 aaKnown RBP11.22□□□□□ -0.61
CUX1-205ENST00000425244 ACO2Q99798 780 aaKnown RBP11.22□□□□□ -0.61
CUX1-205ENST00000425244 SYNCQ9H7C4 482 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 TJP2Q9UDY2 1190 aa11.22□□□□□ -0.61
CUX1-205ENST00000425244 IGKV6-21A0A0C4DH24 114 aa11.21□□□□□ -0.61
CUX1-205ENST00000425244 FAM189A1O60320 539 aa11.21□□□□□ -0.61
CUX1-205ENST00000425244 LSM8O95777 96 aaKnown RBP11.21□□□□□ -0.61
CUX1-205ENST00000425244 RARBP10826 455 aa11.21□□□□□ -0.61
CUX1-205ENST00000425244 CYBAP13498 195 aa11.21□□□□□ -0.61
CUX1-205ENST00000425244 MAP2K2P36507 400 aa11.21□□□□□ -0.61
CUX1-205ENST00000425244 MARCH8Q5T0T0 291 aa11.21□□□□□ -0.61
CUX1-205ENST00000425244 USP15Q9Y4E8 981 aaPredicted RBP11.21□□□□□ -0.61
CUX1-205ENST00000425244 TRIP12Q14669 1992 aaPredicted RBP11.21□□□□□ -0.62
CUX1-205ENST00000425244 DNALI1O14645 258 aaPredicted RBP11.21□□□□□ -0.62
CUX1-205ENST00000425244 PPP1R12AO14974 1030 aaPredicted RBP11.21□□□□□ -0.62
CUX1-205ENST00000425244 BANF1O75531 89 aa11.21□□□□□ -0.62
CUX1-205ENST00000425244 F2P00734 622 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms