RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 CENPLQ8N0S6 344 aaPredicted RBP12.5□□□□□ -0.41
UBR4-205ENST00000417040 POU5F2Q8N7G0 328 aa12.5□□□□□ -0.41
UBR4-205ENST00000417040 TUBGCP3Q96CW5 907 aa12.5□□□□□ -0.41
UBR4-205ENST00000417040 SLC10A4Q96EP9 437 aa12.5□□□□□ -0.41
UBR4-205ENST00000417040 PMPCBO75439 489 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 TGM2P21980 687 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 PTGER2P43116 358 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 SEMA3FQ13275 785 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 TRIP4Q15650 581 aaPredicted RBP12.49□□□□□ -0.41
UBR4-205ENST00000417040 NEDD8Q15843 81 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 QTRT2Q9H974 415 aaKnown RBP12.49□□□□□ -0.41
UBR4-205ENST00000417040 GPRC5CQ9NQ84 441 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 PCDHB2Q9Y5E7 798 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 CLTCL1P53675 1640 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 HS6ST3Q8IZP7 471 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 CAVIN3Q969G5 261 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 APOL2Q9BQE5 337 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 CHST12Q9NRB3 414 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 MRPL42Q9Y6G3 142 aaKnown RBP12.49□□□□□ -0.41
UBR4-205ENST00000417040 ZC3H4Q9UPT8 1303 aaKnown RBP12.49□□□□□ -0.41
UBR4-205ENST00000417040 H0YC42 278 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 RARBP10826 455 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 GSSP48637 474 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 NPEPPSP55786 919 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 ELF3P78545 371 aaPredicted RBP12.49□□□□□ -0.41
UBR4-205ENST00000417040 ACAP1Q15027 740 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 EDRF1Q3B7T1 1238 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 C3orf20Q8ND61 904 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 MOV10L1Q9BXT6 1211 aaKnown RBP12.49□□□□□ -0.41
UBR4-205ENST00000417040 MUC3BQ9H195 1237 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 JMJD4Q9H9V9 463 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 GLI2P10070 1586 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 MAP3K4Q9Y6R4 1608 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 TRPC5OSA6NMA1 111 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 TBC1D12O60347 775 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 HIST1H2AGP0C0S8 130 aaPredicted RBP12.49□□□□□ -0.41
UBR4-205ENST00000417040 THRAP10827 490 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 HIST1H2ADP20671 130 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 FNTAP49354 379 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 ALDH6A1Q02252 535 aaKnown RBP12.49□□□□□ -0.41
UBR4-205ENST00000417040 AADACL2Q6P093 401 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 PRUNE1Q86TP1 453 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 WDR48Q8TAF3 677 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 HIST1H2AHQ96KK5 128 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 HIST1H2AJQ99878 128 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 H2AFJQ9BTM1 129 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 NDEL1Q9GZM8 345 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 INTS13Q9NVM9 706 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 WHRNQ9P202 907 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 C15orf41Q9Y2V0 281 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 MED24O75448 989 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 AASDHQ4L235 1098 aaPredicted RBP12.49□□□□□ -0.41
UBR4-205ENST00000417040 LRRC74BQ6ZQY2 392 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 URGCPQ8TCY9 931 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 PLEKHA8Q96JA3 519 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 NOL6Q9H6R4 1146 aaKnown RBP12.49□□□□□ -0.41
UBR4-205ENST00000417040 AP4S1Q9Y587 144 aa12.49□□□□□ -0.41
UBR4-205ENST00000417040 PGK2P07205 417 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 POU4F1Q01851 419 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 ZNF844Q08AG5 666 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 TTC23LQ6PF05 361 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 CLEC4GQ6UXB4 293 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 OTUB1Q96FW1 271 aaPredicted RBP12.48□□□□□ -0.41
UBR4-205ENST00000417040 CEP41Q9BYV8 373 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 ACAD9Q9H845 621 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 GPBP1L1Q9HC44 474 aaPredicted RBP12.48□□□□□ -0.41
UBR4-205ENST00000417040 ABCC3O15438 1527 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 RPL21P46778 160 aaKnown RBP12.48□□□□□ -0.41
UBR4-205ENST00000417040 PRKCEQ02156 737 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 BAATQ14032 418 aaPredicted RBP12.48□□□□□ -0.41
UBR4-205ENST00000417040 PCNX4Q63HM2 1172 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 PTRHD1Q6GMV3 140 aaKnown RBP12.48□□□□□ -0.41
UBR4-205ENST00000417040 TSHZ1Q6ZSZ6 1077 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 ACTRT1Q8TDG2 376 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 OPTNQ96CV9 577 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 SEPHS2Q99611 448 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 BTBD10Q9BSF8 475 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 MTA3Q9BTC8 594 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 YIPF2Q9BWQ6 316 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 ROGDIQ9GZN7 287 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 DCDC2Q9UHG0 476 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 O00370 1275 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 PEX1O43933 1283 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 TAL1P17542 331 aaPredicted RBP12.48□□□□□ -0.41
UBR4-205ENST00000417040 MZF1P28698 734 aaPredicted RBP12.48□□□□□ -0.41
UBR4-205ENST00000417040 NFYCQ13952 458 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 DDX53Q86TM3 631 aaKnown RBP12.48□□□□□ -0.41
UBR4-205ENST00000417040 SLC44A2Q8IWA5 706 aaPredicted RBP12.48□□□□□ -0.41
UBR4-205ENST00000417040 TNIP3Q96KP6 325 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 REXO4Q9GZR2 422 aaKnown RBP12.48□□□□□ -0.41
UBR4-205ENST00000417040 AGPAT3Q9NRZ7 376 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 PLAGL2Q9UPG8 496 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 RPS6KL1Q9Y6S9 549 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 CDC42BPBQ9Y5S2 1711 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 EXTL3O43909 919 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 CLASP2O75122 1294 aaKnown RBP12.48□□□□□ -0.41
UBR4-205ENST00000417040 ITGB3P05106 788 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 RARGP13631 454 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 HMGCS2P54868 508 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 MTMR8Q96EF0 704 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms