RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 FAM213AQ9BRX8 229 aa13.86□□□□□ -0.19
LINC00339-202ENST00000416769 ECT2Q9H8V3 914 aa13.86□□□□□ -0.19
LINC00339-202ENST00000416769 DDX43Q9NXZ2 648 aaKnown RBP13.86□□□□□ -0.19
LINC00339-202ENST00000416769 KCNG1Q9UIX4 513 aa13.86□□□□□ -0.19
LINC00339-202ENST00000416769 GTF3C4Q9UKN8 822 aa13.86□□□□□ -0.19
LINC00339-202ENST00000416769 DSEQ9UL01 958 aa13.86□□□□□ -0.19
LINC00339-202ENST00000416769 AGAP1Q9UPQ3 857 aa13.86□□□□□ -0.19
LINC00339-202ENST00000416769 PTPRJQ12913 1337 aa13.86□□□□□ -0.19
LINC00339-202ENST00000416769 HELZP42694 1942 aaKnown RBP13.86□□□□□ -0.19
LINC00339-202ENST00000416769 FAM208BQ5VWN6 2430 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 A0A1W2PQ27 194 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 A0A1W2PQ64 194 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 A0A1W2PQD8 194 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 C4orf47A7E2U8 309 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 GOLGA6L22H0YM25 854 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 SLC26A4O43511 780 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 NOL4O94818 638 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 CMA1P23946 247 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 USP4Q13107 963 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 DMC1Q14565 340 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 EML3Q32P44 896 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 INTS6LQ5JSJ4 861 aaKnown RBP13.85□□□□□ -0.19
LINC00339-202ENST00000416769 RNF43Q68DV7 783 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 RASSF8Q8NHQ8 419 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 C2orf15Q8WU43 125 aaKnown RBP13.85□□□□□ -0.19
LINC00339-202ENST00000416769 LARP4BQ92615 738 aaKnown RBP13.85□□□□□ -0.19
LINC00339-202ENST00000416769 MRPS31Q92665 395 aaKnown RBP13.85□□□□□ -0.19
LINC00339-202ENST00000416769 LOXL4Q96JB6 756 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 ZC3H10Q96K80 434 aaKnown RBP13.85□□□□□ -0.19
LINC00339-202ENST00000416769 TSPAN18Q96SJ8 248 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 EDEM2Q9BV94 578 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 LSM14BQ9BX40 385 aaKnown RBP13.85□□□□□ -0.19
LINC00339-202ENST00000416769 STRA6Q9BX79 667 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 ZDHHC4Q9NPG8 344 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 DUS2Q9NX74 493 aaKnown RBP13.85□□□□□ -0.19
LINC00339-202ENST00000416769 GCNT4Q9P109 453 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 SIX4Q9UIU6 781 aa13.85□□□□□ -0.19
LINC00339-202ENST00000416769 MYO18AQ92614 2054 aaKnown RBP13.84□□□□□ -0.19
LINC00339-202ENST00000416769 CCDC163A0A0D9SF12 145 aa13.84□□□□□ -0.19
LINC00339-202ENST00000416769 GOLGA6L4A6NEF3 574 aa13.84□□□□□ -0.19
LINC00339-202ENST00000416769 MYMKA6NI61 221 aa13.84□□□□□ -0.19
LINC00339-202ENST00000416769 USP46P62068 366 aa13.84□□□□□ -0.19
LINC00339-202ENST00000416769 PSMC1P62191 440 aaKnown RBP13.84□□□□□ -0.19
LINC00339-202ENST00000416769 SV2CQ496J9 727 aa13.84□□□□□ -0.19
LINC00339-202ENST00000416769 CC2D1AQ6P1N0 951 aaPredicted RBP13.84□□□□□ -0.19
LINC00339-202ENST00000416769 ZNF720Q7Z2F6 126 aa13.84□□□□□ -0.19
LINC00339-202ENST00000416769 SCN4BQ8IWT1 228 aa13.84□□□□□ -0.19
LINC00339-202ENST00000416769 DCP1BQ8IZD4 617 aaKnown RBP13.84□□□□□ -0.19
LINC00339-202ENST00000416769 CCDC33Q8N5R6 958 aa13.84□□□□□ -0.19
LINC00339-202ENST00000416769 FRMD1Q8N878 549 aa13.84□□□□□ -0.19
LINC00339-202ENST00000416769 GLIS3Q8NEA6 775 aa13.84□□□□□ -0.19
LINC00339-202ENST00000416769 SH3RF2Q8TEC5 729 aa13.84□□□□□ -0.19
LINC00339-202ENST00000416769 NOC3LQ8WTT2 800 aaKnown RBP13.84□□□□□ -0.19
LINC00339-202ENST00000416769 OSCP1Q8WVF1 389 aa13.84□□□□□ -0.19
LINC00339-202ENST00000416769 CBWD1Q9BRT8 395 aa13.84□□□□□ -0.19
LINC00339-202ENST00000416769 NME7Q9Y5B8 376 aa13.84□□□□□ -0.19
LINC00339-202ENST00000416769 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.84□□□□□ -0.19
LINC00339-202ENST00000416769 AKAP13Q12802 2813 aa13.83□□□□□ -0.19
LINC00339-202ENST00000416769 LNP1A1A4G5 178 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 BCLAF3A2AJT9 711 aaKnown RBP13.83□□□□□ -0.2
LINC00339-202ENST00000416769 ATG13O75143 517 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 APBB3O95704 486 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 CKMP06732 381 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 CSH1P0DML2 217 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 CSH2P0DML3 217 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 CHRM1P11229 460 aaPredicted RBP13.83□□□□□ -0.2
LINC00339-202ENST00000416769 HOXB3P14651 431 aaPredicted RBP13.83□□□□□ -0.2
LINC00339-202ENST00000416769 DRD1P21728 446 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 LMO2P25791 158 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 GBP1P32455 592 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 OPRD1P41143 372 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 NOVA1P51513 510 aaKnown RBP13.83□□□□□ -0.2
LINC00339-202ENST00000416769 DGKEP52429 567 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 SHC2P98077 582 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 TSPY1Q01534 308 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 FAM160A1Q05DH4 1040 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 ZNF268Q14587 947 aaPredicted RBP13.83□□□□□ -0.2
LINC00339-202ENST00000416769 PDGFRLQ15198 375 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 C2orf27AQ580R0 203 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 RESP18Q5W5W9 173 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 SHC4Q6S5L8 630 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 SYT13Q7L8C5 426 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 BRSK2Q8IWQ3 736 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 CPA6Q8N4T0 437 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 KCTD17Q8N5Z5 321 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 CD101Q93033 1021 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 DNAJC19Q96DA6 116 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 MTMR12Q9C0I1 747 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 ST6GALNAC4Q9H4F1 302 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 PCIF1Q9H4Z3 704 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 KIF9Q9HAQ2 790 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 PDE11AQ9HCR9 933 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 VPS45Q9NRW7 570 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 LMBRD1Q9NUN5 540 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 FAM13BQ9NYF5 915 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 SNX9Q9Y5X1 595 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 ZZEF1O43149 2961 aa13.83□□□□□ -0.2
LINC00339-202ENST00000416769 PI4KAP42356 2102 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 A0A087X0B3 334 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 FAM237AA0A1B0GTK4 181 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms