RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 HPDP32754 393 aaPredicted RBP15.64■□□□□ 0.09
USP4-203ENST00000415188 IGBP1P78318 339 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 GUCY1A3Q02108 690 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 SKIV2LQ15477 1246 aaKnown RBP15.64■□□□□ 0.09
USP4-203ENST00000415188 MAPK6Q16659 721 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 ODF2Q5BJF6 829 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 FAM26DQ5JW98 314 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 MARCH8Q5T0T0 291 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 SPOPLQ6IQ16 392 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 CPNE8Q86YQ8 564 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 OR5B17Q8NGF7 314 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 EXD1Q8NHP7 514 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 PRPF31Q8WWY3 499 aaKnown RBP15.64■□□□□ 0.09
USP4-203ENST00000415188 ASB2Q96Q27 587 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 ACO2Q99798 780 aaKnown RBP15.64■□□□□ 0.09
USP4-203ENST00000415188 DCLK3Q9C098 648 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 NIF3L1Q9GZT8 377 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 SMARCAD1Q9H4L7 1026 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 PARVAQ9NVD7 372 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 IP6K2Q9UHH9 426 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 NOVA2Q9UNW9 492 aaKnown RBP15.64■□□□□ 0.09
USP4-203ENST00000415188 NUB1Q9Y5A7 615 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 MICAL3Q7RTP6 2002 aa15.64■□□□□ 0.09
USP4-203ENST00000415188 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.63■□□□□ 0.09
USP4-203ENST00000415188 FAM107AO95990 144 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 AGTP01019 485 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 MAGEA9P43362 315 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 TFF2Q03403 129 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 KRT17Q04695 432 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 MAMLD1Q13495 774 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 DUOXA2Q1HG44 320 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 SGSM1Q2NKQ1 1148 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 ZBTB41Q5SVQ8 909 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 LRRC38Q5VT99 294 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 NLRP14Q86W24 1093 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 ATL2Q8NHH9 583 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 FEZF2Q8TBJ5 459 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 SNF8Q96H20 258 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 C11orf70Q9BRQ4 267 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 FOXP3Q9BZS1 431 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 ROPN1BQ9BZX4 212 aaPredicted RBP15.63■□□□□ 0.09
USP4-203ENST00000415188 RASSF4Q9H2L5 321 aa15.63■□□□□ 0.09
USP4-203ENST00000415188 ROPN1Q9HAT0 212 aaPredicted RBP15.63■□□□□ 0.09
USP4-203ENST00000415188 COL4A4P53420 1690 aaPredicted RBP15.63■□□□□ 0.09
USP4-203ENST00000415188 XIRP2A4UGR9 3374 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 A0A087WUV0 522 aaPredicted RBP15.62■□□□□ 0.09
USP4-203ENST00000415188 FAM170AA1A519 330 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 MBLAC1A4D2B0 266 aaPredicted RBP15.62■□□□□ 0.09
USP4-203ENST00000415188 ASAP2O43150 1006 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 EDN1P05305 212 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 GHRP10912 638 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 INSRRP14616 1297 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 MMP8P22894 467 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 MAGOHP61326 146 aaKnown RBP15.62■□□□□ 0.09
USP4-203ENST00000415188 ERVK-21P61565 698 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 MRPS5P82675 430 aaKnown RBP15.62■□□□□ 0.09
USP4-203ENST00000415188 LMNB2Q03252 620 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 MGAT3Q09327 533 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 LAMTOR4Q0VGL1 99 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 CCNG2Q16589 344 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 TTC19Q6DKK2 380 aaPredicted RBP15.62■□□□□ 0.09
USP4-203ENST00000415188 TAF2Q6P1X5 1199 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 TSHZ1Q6ZSZ6 1077 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 TMEM35BQ8NCS4 154 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 MYCBPAPQ8TBZ2 947 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 DNAJB3Q8WWF6 145 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 RNF25Q96BH1 459 aaPredicted RBP15.62■□□□□ 0.09
USP4-203ENST00000415188 RBM41Q96IZ5 413 aaKnown RBP15.62■□□□□ 0.09
USP4-203ENST00000415188 TGS1Q96RS0 853 aaKnown RBP15.62■□□□□ 0.09
USP4-203ENST00000415188 BCCIPQ9P287 314 aaKnown RBP eCLIP15.62■□□□□ 0.09
USP4-203ENST00000415188 CPSF3Q9UKF6 684 aaKnown RBP15.62■□□□□ 0.09
USP4-203ENST00000415188 ANK1P16157 1881 aa15.62■□□□□ 0.09
USP4-203ENST00000415188 ACKR2O00590 384 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 ABLIM1O14639 778 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 NDC80O14777 642 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 RIPK2O43353 540 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 UPP2O95045 317 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 IL18RAPO95256 599 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 PROZP22891 400 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 CDH5P33151 784 aaPredicted RBP15.61■□□□□ 0.09
USP4-203ENST00000415188 PTPN7P35236 360 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 COPS2P61201 443 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 HTRA4P83105 476 aaPredicted RBP15.61■□□□□ 0.09
USP4-203ENST00000415188 KLF1Q13351 362 aaPredicted RBP15.61■□□□□ 0.09
USP4-203ENST00000415188 PLCB4Q15147 1175 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 RHBDF2Q6PJF5 856 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 MPZL3Q6UWV2 235 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 YTHDF3Q7Z739 585 aaKnown RBP15.61■□□□□ 0.09
USP4-203ENST00000415188 RPAINQ86UA6 219 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 CCHCR1Q8TD31 782 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 ZNF473Q8WTR7 871 aaKnown RBP15.61■□□□□ 0.09
USP4-203ENST00000415188 TRAPPC12Q8WVT3 735 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 ZNF606Q8WXB4 792 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 CCT8L2Q96SF2 557 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 C17orf80Q9BSJ5 609 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 FAM49AQ9H0Q0 323 aaPredicted RBP15.61■□□□□ 0.09
USP4-203ENST00000415188 TSPYL2Q9H2G4 693 aaPredicted RBP15.61■□□□□ 0.09
USP4-203ENST00000415188 PCDHGC3Q9UN70 934 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 INSL6Q9Y581 213 aa15.61■□□□□ 0.09
USP4-203ENST00000415188 FAM169AQ9Y6X4 670 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms