RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 NOP53Q9NZM5 478 aaKnown RBP10.36□□□□□ -0.75
SS18-203ENST00000415083 CPSF3Q9UKF6 684 aaKnown RBP10.36□□□□□ -0.75
SS18-203ENST00000415083 CEP350Q5VT06 3117 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 B4GALT5O43286 388 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 SMNDC1O75940 238 aaKnown RBP eCLIP10.36□□□□□ -0.75
SS18-203ENST00000415083 IFNB1P01574 187 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 UBA1P22314 1058 aaKnown RBP10.36□□□□□ -0.75
SS18-203ENST00000415083 NEK3P51956 506 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 SPARCL1Q14515 664 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 CRYMQ14894 314 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 DSTYKQ6XUX3 929 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 ATG14Q6ZNE5 492 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 CLNKQ7Z7G1 428 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 TTC7BQ86TV6 843 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 LONP2Q86WA8 852 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 XYLT1Q86Y38 959 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 RTKN2Q8IZC4 609 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 PRPF31Q8WWY3 499 aaKnown RBP10.36□□□□□ -0.75
SS18-203ENST00000415083 ACO2Q99798 780 aaKnown RBP10.36□□□□□ -0.75
SS18-203ENST00000415083 ACSS3Q9H6R3 686 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 ZNF395Q9H8N7 513 aaPredicted RBP10.36□□□□□ -0.75
SS18-203ENST00000415083 PTPRHQ9HD43 1115 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 PSMC3IPQ9P2W1 217 aaPredicted RBP10.36□□□□□ -0.75
SS18-203ENST00000415083 HACL1Q9UJ83 578 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 SPDYE16A6NNV3 312 aaPredicted RBP10.35□□□□□ -0.75
SS18-203ENST00000415083 CST8O60676 142 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 FARP2O94887 1054 aaPredicted RBP10.35□□□□□ -0.75
SS18-203ENST00000415083 KRT15P19012 456 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 PROZP22891 400 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 TBXAS1P24557 533 aaPredicted RBP10.35□□□□□ -0.75
SS18-203ENST00000415083 GEMIN4P57678 1058 aaKnown RBP10.35□□□□□ -0.75
SS18-203ENST00000415083 ZC3H12AQ5D1E8 599 aaKnown RBP10.35□□□□□ -0.75
SS18-203ENST00000415083 DNAJC24Q6P3W2 148 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 NLRP9Q7RTR0 991 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 USP37Q86T82 979 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 CCDC125Q86Z20 511 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 ENDOVQ8N8Q3 282 aaKnown RBP10.35□□□□□ -0.75
SS18-203ENST00000415083 CCHCR1Q8TD31 782 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 TMEM134Q9H6X4 195 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 FBXO6Q9NRD1 293 aaPredicted RBP10.35□□□□□ -0.75
SS18-203ENST00000415083 SMYD2Q9NRG4 433 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 SLC24A2Q9UI40 661 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 LRRC42Q9Y546 428 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 CXorf49A8MYA2 514 aaPredicted RBP10.35□□□□□ -0.75
SS18-203ENST00000415083 C2CD2LO14523 706 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 ARIH2O95376 493 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 ICAM3P32942 547 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 HIF1AQ16665 826 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 KHDC1Q4VXA5 237 aaKnown RBP10.35□□□□□ -0.75
SS18-203ENST00000415083 C3orf62Q6ZUJ4 267 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 BBS12Q6ZW61 710 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 RHPN2Q8IUC4 686 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 TTC25Q96NG3 672 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 LRRC37BQ96QE4 947 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 MAGEB5Q9BZ81 275 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 IMPG2Q9BZV3 1241 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 C20orf27Q9GZN8 174 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 CXCL16Q9H2A7 254 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 MINDY3Q9H8M7 445 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 RNPEPL1Q9HAU8 725 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 TCEAL9Q9UHQ7 104 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 ZSWIM8A7E2V4 1837 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 UGT1A9O60656 530 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 ATP2A2P16615 1042 aaKnown RBP10.35□□□□□ -0.75
SS18-203ENST00000415083 IL4RP24394 825 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 RAD23BP54727 409 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 SLC8A3P57103 927 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 EEF1DP3Q658K8 133 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 CDCA2Q69YH5 1023 aaPredicted RBP10.35□□□□□ -0.75
SS18-203ENST00000415083 CATSPERGQ6ZRH7 1159 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 RINLQ6ZS11 566 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 TRIM50Q86XT4 487 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 FAM71DQ8N9W8 422 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 SKA1Q96BD8 255 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 SMC6Q96SB8 1091 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 UGT1A7Q9HAW7 530 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 UGT1A10Q9HAW8 530 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 UGT1A8Q9HAW9 530 aa10.35□□□□□ -0.75
SS18-203ENST00000415083 SSU72Q9NP77 194 aaKnown RBP10.35□□□□□ -0.75
SS18-203ENST00000415083 SMG5Q9UPR3 1016 aaKnown RBP10.35□□□□□ -0.75
SS18-203ENST00000415083 OTOFQ9HC10 1997 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 HMX2A2RU54 273 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 A6NHS1 94 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 ATP2A1O14983 1001 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 ENDOD1O94919 500 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 LSM8O95777 96 aaKnown RBP10.34□□□□□ -0.75
SS18-203ENST00000415083 DLDP09622 509 aaKnown RBP10.34□□□□□ -0.75
SS18-203ENST00000415083 LINGO3P0C6S8 592 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 ANO7Q6IWH7 933 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 WDR49Q8IV35 697 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 DEPTORQ8TB45 409 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 INPP5DQ92835 1189 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 C12orf42Q96LP6 360 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 LBHD1Q9BQE6 289 aaPredicted RBP10.34□□□□□ -0.75
SS18-203ENST00000415083 DCTN4Q9UJW0 460 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 TEX264Q9Y6I9 313 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 BRCA2P51587 3418 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 SOWAHBA6NEL2 793 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 SOCS7O14512 581 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 GABBR2O75899 941 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms