RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 GDF6Q6KF10 455 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 NDUFAF2Q8N183 169 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 OR5B17Q8NGF7 314 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 RIN2Q8WYP3 895 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 OSBPL9Q96SU4 736 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 SIK2Q9H0K1 926 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 DPH5Q9H2P9 285 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 VCX3BQ9H321 246 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 TSPAN16Q9UKR8 245 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 KRT71Q3SY84 523 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 CDCA2Q69YH5 1023 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 SLC47A2Q86VL8 602 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 CDKL3Q8IVW4 592 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 SHC3Q92529 594 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 LPPQ93052 612 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 PCYT2Q99447 389 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 OXCT2Q9BYC2 517 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 FGFBP2Q9BYJ0 223 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 PTPN22Q9Y2R2 807 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 COL4A1P02462 1669 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 A0A0A6YYK5 440 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 NCAM1P13591 858 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 MX2P20592 715 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 TPI1P60174 286 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 SMARCB1Q12824 385 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 SNX1Q13596 522 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 ZNF268Q14587 947 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 CNGA2Q16280 664 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 USP41Q3LFD5 358 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 LRRC23Q53EV4 343 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 C1orf228Q6PIY5 440 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 KIF9Q9HAQ2 790 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 TRPC7Q9HCX4 862 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 TMEM161AQ9NX61 479 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 PFDN1O60925 122 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 RTN3O95197 1032 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 GUCY2FP51841 1108 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 KPNA1P52294 538 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 MXRA7P84157 204 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 DR1Q01658 176 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 TBX2Q13207 712 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 ZNF571Q7Z3V5 609 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 DBF4BQ8NFT6 615 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 VPS37BQ9H9H4 285 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 MRPL17Q9NRX2 175 aaKnown RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 ARHGAP20Q9P2F6 1191 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 TIMM13Q9Y5L4 95 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 PIK3R2O00459 728 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 CHRNA3P32297 505 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 HARS2P49590 506 aaKnown RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 LBX1P52954 281 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 HTRA3P83110 453 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 C10orf120Q5SQS8 335 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 PSRC1Q6PGN9 363 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 RYBPQ8N488 228 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 ATP6V0D2Q8N8Y2 350 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 SLC7A14Q8TBB6 771 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 METTL5Q9NRN9 209 aaKnown RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 SH3BP1Q9Y3L3 701 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 RWDD3Q9Y3V2 267 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 OR6C75A6NL08 312 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 PPP1R12AO14974 1030 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 PFKMP08237 780 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 PTPN1P18031 435 aaKnown RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 CDH8P55286 799 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 C9orf57Q5W0N0 161 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 NPAS4Q8IUM7 802 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 ANKRD7Q92527 254 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 C18orf25Q96B23 403 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 CNPY3Q9BT09 278 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 KLC2Q9H0B6 622 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 CYP4F11Q9HBI6 524 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 UXTQ9UBK9 157 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 ALG6Q9Y672 507 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 TRIM66O15016 1216 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 RGS16O15492 202 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 KLRC2P26717 231 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 ORC1Q13415 861 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 LLGL1Q15334 1064 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 UAP1Q16222 522 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 CCDC92Q53HC0 331 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 ZNF618Q5T7W0 954 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 WSCD1Q658N2 575 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 SERINC5Q86VE9 423 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 IRF2BP1Q8IU81 584 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 FAM71AQ8IYT1 594 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 CDKL2Q92772 493 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 HEMGNQ9BXL5 484 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 MRPL46Q9H2W6 279 aaKnown RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 ANAPC5Q9UJX4 755 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 SNX12Q9UMY4 172 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 GNEQ9Y223 722 aaKnown RBP8.92□□□□□ -0.98
SYNE1-211ENST00000413186 HEY1Q9Y5J3 304 aa8.92□□□□□ -0.98
SYNE1-211ENST00000413186 TCHHQ07283 1943 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 APOL1O14791 398 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 PLEKP08567 350 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 CASP8Q14790 479 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms