RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 BRF1Q92994 677 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 IQCDQ96DY2 449 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 DHRS1Q96LJ7 313 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 C17orf75Q9HAS0 396 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 LRRC4Q9HBW1 653 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 TLR7Q9NYK1 1049 aaKnown RBP8.54□□□□□ -1.04
LIMS1-203ENST00000393310 DUSP12Q9UNI6 340 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 H3BM21 787 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 AKAP3O75969 853 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 ITGB1P05556 798 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 CLTAP09496 248 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 PYGBP11216 843 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 VARSP26640 1264 aaKnown RBP8.53□□□□□ -1.04
LIMS1-203ENST00000393310 ATP5DP30049 168 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 MLH1P40692 756 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 IFFO1Q0D2I5 559 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 LPIN1Q14693 890 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 ANKRD49Q8WVL7 239 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 ZCCHC14Q8WYQ9 949 aaKnown RBP8.53□□□□□ -1.04
LIMS1-203ENST00000393310 SMARCD2Q92925 531 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 STIM2Q9P246 746 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 RASAL2Q9UJF2 1139 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 RTN3O95197 1032 aaPredicted RBP8.53□□□□□ -1.04
LIMS1-203ENST00000393310 IL18RAPO95256 599 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 GAP43P17677 238 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 ZNF445P59923 1031 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 DR1Q01658 176 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 UBE2SQ16763 222 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 CHPFQ8IZ52 775 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 VPS37BQ9H9H4 285 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 TBK1Q9UHD2 729 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 PCDHA4Q9UN74 947 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 USH1CQ9Y6N9 552 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 A0A087WZ62 844 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 FOXN3O00409 490 aaPredicted RBP8.53□□□□□ -1.04
LIMS1-203ENST00000393310 SLFN14P0C7P3 912 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 CTNNA1P35221 906 aaKnown RBP8.53□□□□□ -1.04
LIMS1-203ENST00000393310 GNL1P36915 607 aaPredicted RBP8.53□□□□□ -1.04
LIMS1-203ENST00000393310 GUCY2FP51841 1108 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 OVOS1Q6IE37 1185 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 C3orf20Q8ND61 904 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 NXPE2Q96DL1 559 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 FDXACB1Q9BRP7 624 aaPredicted RBP8.53□□□□□ -1.04
LIMS1-203ENST00000393310 SLC29A3Q9BZD2 475 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 R4GN57 208 aa8.53□□□□□ -1.04
LIMS1-203ENST00000393310 NPC1O15118 1278 aa8.52□□□□□ -1.04
LIMS1-203ENST00000393310 TNNI1P19237 187 aa8.52□□□□□ -1.04
LIMS1-203ENST00000393310 GRIK1P39086 918 aa8.52□□□□□ -1.04
LIMS1-203ENST00000393310 PAPOLAP51003 745 aaKnown RBP8.52□□□□□ -1.04
LIMS1-203ENST00000393310 HYAL1Q12794 435 aa8.52□□□□□ -1.04
LIMS1-203ENST00000393310 PRPF39Q86UA1 669 aaKnown RBP8.52□□□□□ -1.04
LIMS1-203ENST00000393310 ARL6IP6Q8N6S5 226 aa8.52□□□□□ -1.04
LIMS1-203ENST00000393310 FBF1Q8TES7 1133 aa8.52□□□□□ -1.04
LIMS1-203ENST00000393310 SLC7A5P2Q9GIP4 190 aa8.52□□□□□ -1.04
LIMS1-203ENST00000393310 LY9Q9HBG7 655 aa8.52□□□□□ -1.04
LIMS1-203ENST00000393310 HCFC2Q9Y5Z7 792 aa8.52□□□□□ -1.04
LIMS1-203ENST00000393310 ESYT2A0FGR8 921 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 MTA2O94776 668 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 PDIA3P30101 505 aaKnown RBP8.52□□□□□ -1.05
LIMS1-203ENST00000393310 LPAL2Q16609 132 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 RASGRP4Q8TDF6 673 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 LHX6Q9UPM6 363 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 A6NNZ2 444 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 LRRIQ3A6PVS8 624 aaPredicted RBP8.52□□□□□ -1.05
LIMS1-203ENST00000393310 DNTTP04053 509 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 AP3M2P53677 418 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 C15orf59Q2T9L4 293 aaPredicted RBP8.52□□□□□ -1.05
LIMS1-203ENST00000393310 ANO4Q32M45 955 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 TUBB8Q3ZCM7 444 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 CCDC14Q49A88 953 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 FAM26DQ5JW98 314 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 ATF7IP2Q5U623 682 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 MOXD1Q6UVY6 613 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 ANKRD42Q8N9B4 389 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 ERP27Q96DN0 273 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 TBC1D32Q96NH3 1257 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 TMEM206Q9H813 350 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 ZBTB40Q9NUA8 1239 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 NCKIPSDQ9NZQ3 722 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 ZSWIM5Q9P217 1185 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 AFF4Q9UHB7 1163 aaKnown RBP8.52□□□□□ -1.05
LIMS1-203ENST00000393310 LAMB4A4D0S4 1761 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 LHX1P48742 406 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 TRPC1P48995 793 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 ATP1A2P50993 1020 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 HTRA4P83105 476 aaPredicted RBP8.52□□□□□ -1.05
LIMS1-203ENST00000393310 ZNF252P-AS1Q0IIN9 211 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 ARID5BQ14865 1188 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 FAM46CQ5VWP2 391 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 POMGNT1Q8WZA1 660 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 LGMNQ99538 433 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 MSTO1Q9BUK6 570 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 EFHD1Q9BUP0 239 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 CAPN11Q9UMQ6 739 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 SLC6A14Q9UN76 642 aa8.52□□□□□ -1.05
LIMS1-203ENST00000393310 NUP98P52948 1817 aa8.51□□□□□ -1.05
LIMS1-203ENST00000393310 GOLGA8CPA6NN73 597 aa8.51□□□□□ -1.05
LIMS1-203ENST00000393310 E7EWF7 191 aa8.51□□□□□ -1.05
LIMS1-203ENST00000393310 E9PMD0 336 aa8.51□□□□□ -1.05
LIMS1-203ENST00000393310 DGKIO75912 1065 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms