RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 SLC30A10Q6XR72 485 aa9.78□□□□□ -0.84
PTPRA-204ENST00000380393 AMIGO2Q86SJ2 522 aa9.78□□□□□ -0.84
PTPRA-204ENST00000380393 CAND1Q86VP6 1230 aaKnown RBP9.78□□□□□ -0.84
PTPRA-204ENST00000380393 CCDC25Q86WR0 208 aa9.78□□□□□ -0.84
PTPRA-204ENST00000380393 SLC16A10Q8TF71 515 aa9.78□□□□□ -0.84
PTPRA-204ENST00000380393 FAM172AQ8WUF8 416 aa9.78□□□□□ -0.84
PTPRA-204ENST00000380393 NLRP7Q8WX94 980 aa9.78□□□□□ -0.84
PTPRA-204ENST00000380393 CNBD2Q96M20 576 aa9.78□□□□□ -0.84
PTPRA-204ENST00000380393 PANX3Q96QZ0 392 aa9.78□□□□□ -0.84
PTPRA-204ENST00000380393 HERC2P3Q9BVR0 1158 aa9.78□□□□□ -0.84
PTPRA-204ENST00000380393 Q9H521 79 aa9.78□□□□□ -0.84
PTPRA-204ENST00000380393 SCPEP1Q9HB40 452 aa9.78□□□□□ -0.84
PTPRA-204ENST00000380393 IGSF9Q9P2J2 1179 aa9.78□□□□□ -0.84
PTPRA-204ENST00000380393 DAPK2Q9UIK4 370 aa9.78□□□□□ -0.84
PTPRA-204ENST00000380393 NOSIPQ9Y314 301 aaKnown RBP9.78□□□□□ -0.84
PTPRA-204ENST00000380393 SLC4A4Q9Y6R1 1079 aa9.78□□□□□ -0.84
PTPRA-204ENST00000380393 BTAF1O14981 1849 aa9.77□□□□□ -0.84
PTPRA-204ENST00000380393 CPA2P48052 419 aa9.77□□□□□ -0.84
PTPRA-204ENST00000380393 NKX2-5P52952 324 aaPredicted RBP9.77□□□□□ -0.84
PTPRA-204ENST00000380393 XIAPP98170 497 aa9.77□□□□□ -0.84
PTPRA-204ENST00000380393 KLRC3Q07444 240 aa9.77□□□□□ -0.84
PTPRA-204ENST00000380393 IKQ13123 557 aaPredicted RBP9.77□□□□□ -0.84
PTPRA-204ENST00000380393 PTK2BQ14289 1009 aa9.77□□□□□ -0.84
PTPRA-204ENST00000380393 NAB2Q15742 525 aa9.77□□□□□ -0.84
PTPRA-204ENST00000380393 NTRK3Q16288 839 aa9.77□□□□□ -0.84
PTPRA-204ENST00000380393 TAF12Q16514 161 aa9.77□□□□□ -0.84
PTPRA-204ENST00000380393 CLIP4Q8N3C7 705 aa9.77□□□□□ -0.84
PTPRA-204ENST00000380393 ZNF579Q8NAF0 562 aaKnown RBP9.77□□□□□ -0.84
PTPRA-204ENST00000380393 PSD4Q8NDX1 1056 aa9.77□□□□□ -0.84
PTPRA-204ENST00000380393 ATP2A3Q93084 1043 aa9.77□□□□□ -0.84
PTPRA-204ENST00000380393 TBCBQ99426 244 aa9.77□□□□□ -0.84
PTPRA-204ENST00000380393 DCTN4Q9UJW0 460 aa9.77□□□□□ -0.84
PTPRA-204ENST00000380393 VANGL2Q9ULK5 521 aa9.77□□□□□ -0.84
PTPRA-204ENST00000380393 A0A1W2PQJ5 194 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.77□□□□□ -0.85
PTPRA-204ENST00000380393 B8ZZF3 427 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 KPNA4O00629 521 aaPredicted RBP9.77□□□□□ -0.85
PTPRA-204ENST00000380393 KRT5P13647 590 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 LIFRP42702 1097 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 RAP1GDS1P52306 607 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 ACTR3P61158 418 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 Q3C1V9 767 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 EARS2Q5JPH6 523 aaKnown RBP9.77□□□□□ -0.85
PTPRA-204ENST00000380393 SH3RF1Q7Z6J0 888 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 SRRM1Q8IYB3 904 aaKnown RBP9.77□□□□□ -0.85
PTPRA-204ENST00000380393 MARVELD2Q8N4S9 558 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 CSGALNACT2Q8N6G5 542 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 PYDC1Q8WXC3 89 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 PSPC1Q8WXF1 523 aaKnown RBP9.77□□□□□ -0.85
PTPRA-204ENST00000380393 SLC7A3Q8WY07 619 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 TMIGD2Q96BF3 282 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 MTBPQ96DY7 904 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 PTCD3Q96EY7 689 aaKnown RBP9.77□□□□□ -0.85
PTPRA-204ENST00000380393 UROC1Q96N76 676 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 SPOCK3Q9BQ16 436 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 ISCA1Q9BUE6 129 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 ROPN1BQ9BZX4 212 aaPredicted RBP9.77□□□□□ -0.85
PTPRA-204ENST00000380393 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.77□□□□□ -0.851e-6■■□□□ 11.8
PTPRA-204ENST00000380393 MMRN2Q9H8L6 949 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 ROPN1Q9HAT0 212 aaPredicted RBP9.77□□□□□ -0.85
PTPRA-204ENST00000380393 NPHS2Q9NP85 383 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 FAM217BQ9NTX9 383 aaPredicted RBP9.77□□□□□ -0.85
PTPRA-204ENST00000380393 MYO5AQ9Y4I1 1855 aaKnown RBP9.77□□□□□ -0.85
PTPRA-204ENST00000380393 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.77□□□□□ -0.85
PTPRA-204ENST00000380393 ILVBLA1L0T0 632 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 CFAP99D6REC4 459 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 CES2O00748 559 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 C2CD2LO14523 706 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 ATMINO43313 823 aaPredicted RBP9.77□□□□□ -0.85
PTPRA-204ENST00000380393 FKBP6O75344 327 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 MTA2O94776 668 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 ALX3O95076 343 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 PRLP01236 227 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 HADHAP40939 763 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 ECE1P42892 770 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 PHC1P78364 1004 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 PTGDRQ13258 359 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 FBXL16Q8N461 479 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 CHCHD4Q8N4Q1 142 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 BTBD9Q96Q07 612 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 LY9Q9HBG7 655 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 GIMAP4Q9NUV9 329 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 DCAF16Q9NXF7 216 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 TACC3Q9Y6A5 838 aa9.77□□□□□ -0.85
PTPRA-204ENST00000380393 PFASO15067 1338 aa9.76□□□□□ -0.85
PTPRA-204ENST00000380393 E9PMD0 336 aa9.76□□□□□ -0.85
PTPRA-204ENST00000380393 RGS13O14921 159 aa9.76□□□□□ -0.85
PTPRA-204ENST00000380393 XPO1O14980 1071 aaKnown RBP9.76□□□□□ -0.85
PTPRA-204ENST00000380393 RARGP13631 454 aa9.76□□□□□ -0.85
PTPRA-204ENST00000380393 HNRNPH3P31942 346 aaKnown RBP9.76□□□□□ -0.85
PTPRA-204ENST00000380393 FDFT1P37268 417 aa9.76□□□□□ -0.85
PTPRA-204ENST00000380393 NR4A2P43354 598 aa9.76□□□□□ -0.85
PTPRA-204ENST00000380393 RPL26P61254 145 aaKnown RBP9.76□□□□□ -0.85
PTPRA-204ENST00000380393 FOXO4P98177 505 aa9.76□□□□□ -0.85
PTPRA-204ENST00000380393 ARID5AQ03989 594 aa9.76□□□□□ -0.85
PTPRA-204ENST00000380393 GALNT1Q10472 559 aaPredicted RBP9.76□□□□□ -0.85
PTPRA-204ENST00000380393 PPP6R3Q5H9R7 873 aaPredicted RBP9.76□□□□□ -0.85
PTPRA-204ENST00000380393 AHI1Q8N157 1196 aa9.76□□□□□ -0.85
PTPRA-204ENST00000380393 METTL13Q8N6R0 699 aa9.76□□□□□ -0.85
PTPRA-204ENST00000380393 OMA1Q96E52 524 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms