RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 FAM96AQ9H5X1 160 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 TUT1Q9H6E5 874 aaKnown RBP12.89□□□□□ -0.35
CHD3-203ENST00000380358 GTF2H1P32780 548 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 ZNF200P98182 395 aaPredicted RBP12.89□□□□□ -0.35
CHD3-203ENST00000380358 RHAGQ02094 409 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 ATF7IP2Q5U623 682 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 DET1Q7L5Y6 550 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 GLT1D1Q96MS3 346 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 SLC4A9Q96Q91 983 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 PARK7Q99497 189 aaKnown RBP12.89□□□□□ -0.35
CHD3-203ENST00000380358 TEX13BQ9BXU2 312 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 MYLK2Q9H1R3 596 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 TMCC3Q9ULS5 477 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 TIMM13Q9Y5L4 95 aaPredicted RBP12.89□□□□□ -0.35
CHD3-203ENST00000380358 TSPOAP1O95153 1857 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 C16orf96A6NNT2 1141 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 F5H5T6 163 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 TRAF2Q12933 501 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 ZNF284Q2VY69 593 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 PARGQ86W56 976 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 PCYOX1LQ8NBM8 494 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 SLC35G2Q8TBE7 412 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 GFM2Q969S9 779 aaKnown RBP12.89□□□□□ -0.35
CHD3-203ENST00000380358 NUDT12Q9BQG2 462 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 GINS4Q9BRT9 223 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 PIH1D1Q9NWS0 290 aaKnown RBP12.89□□□□□ -0.35
CHD3-203ENST00000380358 STON1Q9Y6Q2 735 aa12.89□□□□□ -0.35
CHD3-203ENST00000380358 TCEA3O75764 348 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 CIAO1O76071 339 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 LTFP02788 710 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 HNRNPH2P55795 449 aaKnown RBP12.88□□□□□ -0.35
CHD3-203ENST00000380358 TRIP10Q15642 601 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 PARP9Q8IXQ6 854 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 DCP1BQ8IZD4 617 aaKnown RBP12.88□□□□□ -0.35
CHD3-203ENST00000380358 NEK7Q8TDX7 302 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 DIABLOQ9NR28 239 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 DDIT4Q9NX09 232 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 PRKAG3Q9UGI9 489 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 LNPEPQ9UIQ6 1025 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 EDC4Q6P2E9 1401 aaKnown RBP12.88□□□□□ -0.35
CHD3-203ENST00000380358 C2orf81A6NN90 581 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 CHUKO15111 745 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 PSMC3P17980 439 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 ACO1P21399 889 aaKnown RBP12.88□□□□□ -0.35
CHD3-203ENST00000380358 SLC11A2P49281 568 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 MRPS31Q92665 395 aaKnown RBP12.88□□□□□ -0.35
CHD3-203ENST00000380358 MAP4K1Q92918 833 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 SLC9A7Q96T83 725 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 PHACTR1Q9C0D0 580 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 WWP1Q9H0M0 922 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 PITPNM2Q9BZ72 1349 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 ERI2A8K979 691 aaKnown RBP12.88□□□□□ -0.35
CHD3-203ENST00000380358 IFNA16P05015 189 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 CAMK1Q14012 370 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 FNDC3BQ53EP0 1204 aaKnown RBP12.88□□□□□ -0.35
CHD3-203ENST00000380358 hCG_1984214I3L0E3 225 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 NR5A2O00482 541 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 OVGP1Q12889 678 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 ISLR2Q6UXK2 745 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 ZNF713Q8N859 430 aaPredicted RBP12.88□□□□□ -0.35
CHD3-203ENST00000380358 C19orf18Q8NEA5 215 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 CSGALNACT1Q8TDX6 532 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 RNF19AQ9NV58 838 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 RAB23Q9ULC3 237 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 POMCP01189 267 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 FAM200BP0CF97 657 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 DEFA1P59665 94 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 DEFA3P59666 94 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 ZNF57Q68EA5 555 aaPredicted RBP12.88□□□□□ -0.35
CHD3-203ENST00000380358 ELMO3Q96BJ8 720 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.88□□□□□ -0.352e-8■□□□□ 10.2
CHD3-203ENST00000380358 C17orf102A2RUQ5 167 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 SH2D3CQ8N5H7 860 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 CCDC185Q8N715 623 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 SERHL2Q9H4I8 314 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 SERHLQ9NQF3 203 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 NEU2Q9Y3R4 380 aa12.88□□□□□ -0.35
CHD3-203ENST00000380358 IFRD1O00458 451 aaPredicted RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 VPS26AO75436 327 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 PRKAG1P54619 331 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 FCGRTP55899 365 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 CAV1Q03135 178 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 BRINP3Q76B58 766 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 RBBP8NLQ8NC74 664 aaPredicted RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 USP7Q93009 1102 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 CEP41Q9BYV8 373 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 EIF3LQ9Y262 564 aaKnown RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 LRCH1Q9Y2L9 728 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 TBX22Q9Y458 520 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 CCNT2O60583 730 aaKnown RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 ATP5HO75947 161 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 PRKAA1Q13131 559 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 ARHGEF26Q96DR7 871 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 RNPC3Q96LT9 517 aaKnown RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 DIS3Q9Y2L1 958 aaKnown RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 DCDC2CA8MYV0 355 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 PDIA6Q15084 440 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 TRADDQ15628 312 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 GPAT2Q6NUI2 795 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 PTAR1Q7Z6K3 402 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms