RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 RPTORQ8N122 1335 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 HOXC6P09630 235 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 EPHB2P29323 1055 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 ARL2P36404 184 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 LHX1P48742 406 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 HNRNPH2P55795 449 aaKnown RBP15.16■□□□□ 0.02
TCOF1-202ENST00000377797 MAP3K7CLP57077 242 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 ACTL9Q8TC94 416 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 ZBTB10Q96DT7 871 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 VPS39Q96JC1 886 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 VPS11Q9H270 941 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 DMAC2Q9NW81 257 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 RRP15Q9Y3B9 282 aaKnown RBP15.16■□□□□ 0.02
TCOF1-202ENST00000377797 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.16■□□□□ 0.02
TCOF1-202ENST00000377797 SIPA1L3O60292 1781 aaPredicted RBP15.16■□□□□ 0.02
TCOF1-202ENST00000377797 ASS1P00966 412 aaKnown RBP15.16■□□□□ 0.02
TCOF1-202ENST00000377797 AGTP01019 485 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 STIP1P31948 543 aaKnown RBP15.16■□□□□ 0.02
TCOF1-202ENST00000377797 RPS6KA2Q15349 733 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 PPFIBP2Q8ND30 876 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 KRT82Q9NSB4 513 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 ZC3H7BQ9UGR2 993 aaKnown RBP15.16■□□□□ 0.02
TCOF1-202ENST00000377797 RAB21Q9UL25 225 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 SPAG7O75391 227 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 SETSIPP0DME0 302 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 PAMP19021 973 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 PDK1Q15118 436 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 USP33Q8TEY7 942 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 SYT15Q9BQS2 421 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 ANKRD65E5RJM6 399 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 PPP1R37O75864 691 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 PTGISQ16647 500 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 PABPC3Q9H361 631 aaKnown RBP15.15■□□□□ 0.02
TCOF1-202ENST00000377797 LOC102724159A0A0B4J2E5 919 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 CES2O00748 559 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 HMGCRP04035 888 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 TMPRSS15P98073 1019 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 BFSP2Q13515 415 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 PWP2Q15269 919 aaKnown RBP15.15■□□□□ 0.02
TCOF1-202ENST00000377797 CCNG2Q16589 344 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 SCUBE3Q8IX30 993 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 PCDHA2Q9Y5H9 948 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 DRP2Q13474 957 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 FAXCQ5TGI0 409 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 IFT43Q96FT9 208 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 DDX27Q96GQ7 796 aaKnown RBP15.15■□□□□ 0.02
TCOF1-202ENST00000377797 NTPCRQ9BSD7 190 aaKnown RBP15.15■□□□□ 0.02
TCOF1-202ENST00000377797 TMEM121Q9BTD3 319 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 RARAP10276 462 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 ZBTB41Q5SVQ8 909 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 C3orf62Q6ZUJ4 267 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 KDELC2Q7Z4H8 507 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 C3orf20Q8ND61 904 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 SKA2Q8WVK7 121 aaPredicted RBP15.15■□□□□ 0.02
TCOF1-202ENST00000377797 SLC13A1Q9BZW2 595 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 WDCPQ9H6R7 721 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 CDY2AQ9Y6F7 541 aa15.15■□□□□ 0.02
TCOF1-202ENST00000377797 FLT3LGP49771 235 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 FAM133BQ5BKY9 247 aaKnown RBP15.14■□□□□ 0.01
TCOF1-202ENST00000377797 DENND1BQ6P3S1 775 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 DCLK2Q8N568 766 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 SLC2A14Q8TDB8 520 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 MAML3Q96JK9 1138 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 COLEC11Q9BWP8 271 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 TXNRD2Q9NNW7 524 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 ZFATQ9P243 1243 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 TAF1P21675 1872 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 F8VP50 259 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 ALDH7A1P49419 539 aaKnown RBP15.14■□□□□ 0.01
TCOF1-202ENST00000377797 SP3Q02447 781 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 ASPHQ12797 758 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 TAF1BQ53T94 588 aaPredicted RBP15.14■□□□□ 0.01
TCOF1-202ENST00000377797 NMRK2Q9NPI5 230 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 GOLGA8CPA6NN73 597 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 GOLGA8RI6L899 631 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 GPC4O75487 556 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 MMP3P08254 477 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 CTCFP49711 727 aaPredicted RBP15.14■□□□□ 0.01
TCOF1-202ENST00000377797 TKTL1P51854 596 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 KPNA2P52292 529 aaKnown RBP15.14■□□□□ 0.01
TCOF1-202ENST00000377797 COPS2P61201 443 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 PDK2Q15119 407 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 MFSD7Q6UXD7 560 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 PPIL6Q8IXY8 311 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 TRABDQ9H4I3 376 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 HMX1Q9NP08 348 aaPredicted RBP15.14■□□□□ 0.01
TCOF1-202ENST00000377797 DCDC2CA8MYV0 355 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 RAB27AP51159 221 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 NOGQ13253 232 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 RCN2Q14257 317 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 ELMOD1Q8N336 334 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 BRI3BPQ8WY22 251 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.14■□□□□ 0.013e-9■■■■■ 78.5
TCOF1-202ENST00000377797 SLITRK1Q96PX8 696 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 ADAM2Q99965 735 aa15.14■□□□□ 0.01
TCOF1-202ENST00000377797 E5RJQ4 531 aa15.13■□□□□ 0.01
TCOF1-202ENST00000377797 C2CD2LO14523 706 aa15.13■□□□□ 0.01
TCOF1-202ENST00000377797 MDH1P40925 334 aaKnown RBP15.13■□□□□ 0.01
TCOF1-202ENST00000377797 SP2Q02086 613 aa15.13■□□□□ 0.01
TCOF1-202ENST00000377797 ATPAF2Q8N5M1 289 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms