RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 UTP4Q969X6 686 aaKnown RBP10.09□□□□□ -0.79
TRIM39-202ENST00000376659 C9orf72Q96LT7 481 aa10.09□□□□□ -0.79
TRIM39-202ENST00000376659 SELENOSQ9BQE4 189 aa10.09□□□□□ -0.79
TRIM39-202ENST00000376659 STMN4Q9H169 189 aaPredicted RBP10.09□□□□□ -0.79
TRIM39-202ENST00000376659 USP29Q9HBJ7 922 aa10.09□□□□□ -0.79
TRIM39-202ENST00000376659 GBA2Q9HCG7 927 aaPredicted RBP10.09□□□□□ -0.79
TRIM39-202ENST00000376659 ADARB2Q9NS39 739 aaKnown RBP10.09□□□□□ -0.79
TRIM39-202ENST00000376659 USP3Q9Y6I4 520 aa10.09□□□□□ -0.79
TRIM39-202ENST00000376659 DHRS4L1P0CG22 281 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 MARK3P27448 753 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 CDH8P55286 799 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 YWHAEP62258 255 aaKnown RBP10.08□□□□□ -0.8
TRIM39-202ENST00000376659 ZNF268Q14587 947 aaPredicted RBP10.08□□□□□ -0.8
TRIM39-202ENST00000376659 LRRC14Q15048 493 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 CTC1Q2NKJ3 1217 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 CYB5D1Q6P9G0 228 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 MOB2Q70IA6 237 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 ZNF534Q76KX8 674 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 VSIG1Q86XK7 387 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 FITM2Q8N6M3 262 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 SGSM3Q96HU1 749 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 MAK16Q9BXY0 300 aaKnown RBP10.08□□□□□ -0.8
TRIM39-202ENST00000376659 FGFR1OP2Q9NVK5 253 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 NYNRINQ9P2P1 1898 aaKnown RBP10.08□□□□□ -0.8
TRIM39-202ENST00000376659 TCP11X1B4DZS4 312 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 ATICP31939 592 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 PCK1P35558 622 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 DPYSL3Q14195 570 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 ADGRD1Q6QNK2 874 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 SCARA5Q6ZMJ2 495 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 TRPM8Q7Z2W7 1104 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 ECHDC2Q86YB7 292 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 UNC45BQ8IWX7 931 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 PPTC7Q8NI37 304 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 ELP3Q9H9T3 547 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 DONSONQ9NYP3 566 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 ZNF487B1APH4 448 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 RPL22P35268 128 aaKnown RBP10.08□□□□□ -0.8
TRIM39-202ENST00000376659 OTUD4Q01804 1114 aaKnown RBP10.08□□□□□ -0.8
TRIM39-202ENST00000376659 LMNB2Q03252 620 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 HIC1Q14526 733 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 ACAP1Q15027 740 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 ODF2Q5BJF6 829 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 LDLRAD1Q5T700 205 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 CES4AQ5XG92 561 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 CCDC25Q86WR0 208 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 ERO1BQ86YB8 467 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 RHPN2Q8IUC4 686 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 THNSL1Q8IYQ7 743 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 PQLC3Q8N755 202 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 L3MBTL3Q96JM7 780 aaPredicted RBP10.08□□□□□ -0.8
TRIM39-202ENST00000376659 CABS1Q96KC9 395 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 CCDC114Q96M63 670 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 ADAMTS10Q9H324 1103 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 C10orf88Q9H8K7 445 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 ARHGEF3Q9NR81 526 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 METTL5Q9NRN9 209 aaKnown RBP10.08□□□□□ -0.8
TRIM39-202ENST00000376659 KLC4Q9NSK0 619 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 CNTN3Q9P232 1028 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 STRIP2Q9ULQ0 834 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 SUFUQ9UMX1 484 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 TEX264Q9Y6I9 313 aa10.08□□□□□ -0.8
TRIM39-202ENST00000376659 TLDC2A0PJX2 215 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 APOC4-APOC2K7ER74 178 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 APOC2P02655 101 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 LGALS2P05162 132 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 STAG3L1P0CL83 205 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 SRGAP2CP0DJJ0 459 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 ARF4P18085 180 aaPredicted RBP10.07□□□□□ -0.8
TRIM39-202ENST00000376659 HOXA11P31270 313 aaPredicted RBP10.07□□□□□ -0.8
TRIM39-202ENST00000376659 ETV4P43268 484 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 NRLP54845 237 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 PTPN11Q06124 597 aaPredicted RBP10.07□□□□□ -0.8
TRIM39-202ENST00000376659 ORC1Q13415 861 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 NOMO1Q15155 1222 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 PKN2Q16513 984 aaKnown RBP10.07□□□□□ -0.8
TRIM39-202ENST00000376659 OTUD1Q5VV17 481 aaPredicted RBP10.07□□□□□ -0.8
TRIM39-202ENST00000376659 SLC9A4Q6AI14 798 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 EFCAB12Q6NXP0 572 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 LCLAT1Q6UWP7 414 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 CCDC50Q8IVM0 306 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 EXOC8Q8IYI6 725 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 SPATA33Q96N06 139 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 SCLT1Q96NL6 688 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 PNPLA8Q9NP80 782 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 USP15Q9Y4E8 981 aaPredicted RBP10.07□□□□□ -0.8
TRIM39-202ENST00000376659 UNCXA6NJT0 531 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 HBP1O60381 514 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 DDNO94850 711 aaPredicted RBP10.07□□□□□ -0.8
TRIM39-202ENST00000376659 NEK3P51956 506 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 ZNF143P52747 638 aaPredicted RBP10.07□□□□□ -0.8
TRIM39-202ENST00000376659 RIPK1Q13546 671 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 SLC1A5Q15758 541 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 ZNF394Q53GI3 561 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 CDR2LQ86X02 465 aaPredicted RBP10.07□□□□□ -0.8
TRIM39-202ENST00000376659 NCAPG2Q86XI2 1143 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 PLD5Q8N7P1 536 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 C10orf82Q8WW14 230 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 SPOCK2Q92563 424 aa10.07□□□□□ -0.8
TRIM39-202ENST00000376659 CENPIQ92674 756 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms