RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 TRAPPC11Q7Z392 1133 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 AGAP3Q96P47 875 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 INTS2Q9H0H0 1204 aaKnown RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 DKK3Q9UBP4 350 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 LMTK3Q96Q04 1460 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 DNMT1P26358 1616 aaKnown RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 SMIM22K7EJ46 135 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 ADD2P35612 726 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 FCHO2Q0JRZ9 810 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 SMAD1Q15797 465 aaKnown RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 SEL1L3Q68CR1 1132 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 PJA1Q8NG27 643 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 EAF2Q96CJ1 260 aaPredicted RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 SLCO1B7G3V0H7 640 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 GRK4P32298 578 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 CBFBQ13951 182 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 PABPC5Q96DU9 382 aaKnown RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 GSTK1Q9Y2Q3 226 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 SFI1A8K8P3 1242 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 O00370 1275 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 NCK2O43639 380 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 CYP2D6P10635 497 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 SLC18A3Q16572 532 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 TMEM179Q6ZVK1 233 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 OSCP1Q8WVF1 389 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 C18orf25Q96B23 403 aaPredicted RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 AGPAT1Q99943 283 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 POLR3FQ9H1D9 316 aaPredicted RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 PADI4Q9UM07 663 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 ING4Q9UNL4 249 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 RNF123Q5XPI4 1314 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 A0A0X1KG70 313 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 CDC25AP30304 524 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 RCAN1P53805 252 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 TRAP1Q12931 704 aaKnown RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 TIGD7Q6NT04 549 aaPredicted RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 ZNF746Q6NUN9 644 aaPredicted RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 ADGRG1Q9Y653 693 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 CENPCQ03188 943 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 UBE2SQ16763 222 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 RTKN2Q8IZC4 609 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 MPP4Q96JB8 637 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 HOXC10Q9NYD6 342 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 CCDC59Q9P031 241 aaKnown RBP12.05□□□□□ -0.48
VPS13A-205ENST00000376636 ATP6V1HQ9UI12 483 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 EMSYQ7Z589 1322 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 ANXA6P08133 673 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 UQCRBP14927 111 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 CAMK1DQ8IU85 385 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 PPIL6Q8IXY8 311 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 CLYBLQ8N0X4 340 aa12.05□□□□□ -0.48
VPS13A-205ENST00000376636 CCNA2P20248 432 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 DOK7Q18PE1 504 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 SCARA3Q6AZY7 606 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 AP3S1Q92572 193 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 RACGAP1Q9H0H5 632 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 FAM217BQ9NTX9 383 aaPredicted RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 FBXO28Q9NVF7 368 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 STOML2Q9UJZ1 356 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 SHROOM2Q13796 1616 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 RAD51BO15315 384 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 FUT11Q495W5 492 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 KCNV1Q6PIU1 500 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 ARMCX6Q7L4S7 300 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 SLC20A1Q8WUM9 679 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 EPB41L4BQ9H329 900 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 DSN1Q9H410 356 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 MGRN1O60291 552 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 CNTFP26441 200 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 ACADSBP45954 432 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 CAMK2GQ13555 558 aaPredicted RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 SLC35G2Q8TBE7 412 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 FRMD8P1Q9BZ68 369 aaPredicted RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 NEK6Q9HC98 313 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 CCDC189A1A4V9 331 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 UTYO14607 1347 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 TIMM44O43615 452 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 FAM20BO75063 409 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 POU1F1P28069 291 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 RPL19P84098 196 aaKnown RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 BNC1Q01954 994 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 SMCO1Q147U7 214 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 DBR1Q9UK59 544 aaKnown RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 SLC39A10Q9ULF5 831 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 CCDC162PA2VCL2 907 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 TEX46H3BTG2 121 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 FDFT1P37268 417 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 ATN1P54259 1190 aaPredicted RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 ILF2Q12905 390 aaKnown RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 IL31Q6EBC2 164 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 STK33Q9BYT3 514 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 FEM1BQ9UK73 627 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 MZF1P28698 734 aaPredicted RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 ACLYP53396 1101 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 CCDC153Q494R4 210 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 ZRANB3Q5FWF4 1079 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 KIF12Q96FN5 646 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 AGO2Q9UKV8 859 aaKnown RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 A0A087X0T9 212 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms