RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 SWI5Q1ZZU3 235 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ALDH1L2Q3SY69 923 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 TEDDM1Q5T9Z0 273 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 WDR93Q6P2C0 686 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 CEP170P1Q96L14 293 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 LDAHQ9H6V9 325 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ENY2Q9NPA8 101 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PARPBPQ9NWS1 579 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF226Q9NYT6 803 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 DBF4Q9UBU7 674 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 RCOR1Q9UKL0 485 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PCDHA12Q9UN75 941 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 SLC30A1Q9Y6M5 507 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 WDR7Q9Y4E6 1490 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 SGSM2O43147 1006 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ALDH1L1O75891 902 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 THP07101 528 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 VAV1P15498 845 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 STOMP27105 288 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 CDC25AP30304 524 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 MASP1P48740 699 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PDE1AP54750 535 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 EIF3EP60228 445 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 TFCP2Q12800 502 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 CAMK2DQ13557 499 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 BEND6Q5SZJ8 279 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 THNSL1Q8IYQ7 743 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 IFNL2Q8IZJ0 200 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 TTC29Q8NA56 475 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 OR2L3Q8NG85 312 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 GJA10Q969M2 543 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 RUNDC3BQ96NL0 473 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 CAMKK2Q96RR4 588 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 NIF3L1Q9GZT8 377 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 EPS8L2Q9H6S3 715 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 MAGEF1Q9HAY2 307 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 MIEF1Q9NQG6 463 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 LIMA1Q9UHB6 759 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 HEMK1Q9Y5R4 338 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 LYVE1Q9Y5Y7 322 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 USP19O94966 1318 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 KDM3AQ9Y4C1 1321 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 CYP27B1O15528 508 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 KERAO60938 352 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 PSIP1O75475 530 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 TFPIP10646 304 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CCNOP22674 350 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 S100A2P29034 98 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 EIF4A3P38919 411 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 MAGEA10P43363 369 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CLK2P49760 499 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CREB5Q02930 508 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF284Q2VY69 593 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 RABL6Q3YEC7 729 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 TBC1D9BQ66K14 1250 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 LIN54Q6MZP7 749 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 POMZP3Q6PJE2 187 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 GALNT7Q86SF2 657 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 SERAC1Q96JX3 654 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF560Q96MR9 790 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 BBS4Q96RK4 519 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF577Q9BSK1 485 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CIPCQ9C0C6 399 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ROGDIQ9GZN7 287 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 TRMT6Q9UJA5 497 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ZSCAN5CA6NGD5 496 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 RHPN2P1A8MT19 583 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 GNA14O95837 355 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 PAICSP22234 425 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CALB2P22676 271 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ADORA2BP29275 332 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 MFAP3P55082 362 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 EIF3BP55884 814 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 RBM6P78332 1123 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 FANCCQ00597 558 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 HIC1Q14526 733 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 RAB39AQ14964 217 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 NAB2Q15742 525 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 MDH1BQ5I0G3 518 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ANKRD13DQ6ZTN6 518 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CYFIP1Q7L576 1253 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 KRT25Q7Z3Z0 450 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CABP7Q86V35 215 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ARHGEF25Q86VW2 580 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 TFB1MQ8WVM0 346 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 TEX13BQ9BXU2 312 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 SH3BP4Q9P0V3 963 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ERVK-18Q9QC07 812 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ZFP69BQ9UJL9 534 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 PTPRGP23470 1445 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 A0A0G2JPF8 293 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 GNG14A0A1W2PPG7 69 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 HNRNPCL3B7ZW38 293 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 GTPBP1O00178 669 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CLN5O75503 358 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 HNRNPCL4P0DMR1 293 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 NR1D1P20393 614 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ECHS1P30084 290 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ETFBP38117 255 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CDH18Q13634 790 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms