RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 C17orf102A2RUQ5 167 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 ZSCAN5CA6NGD5 496 aaPredicted RBP9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 RASGRF2O14827 1237 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 PPP1R12AO14974 1030 aaPredicted RBP9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 RIPK2O43353 540 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 GPR32O75388 356 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 ENDOD1O94919 500 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 CELF2O95319 508 aaKnown RBP9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 FAM107AO95990 144 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 GSTA2P09210 222 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 SMIM10L2AP0DMW4 78 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 SMIM10L2BP0DMW5 78 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 CYP2C9P11712 490 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 CD58P19256 250 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 GPD1P21695 349 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 TGM2P21980 687 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 LRPAP1P30533 357 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 RPL9P32969 192 aaKnown RBP9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 CDKN2BP42772 138 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 PTPN9P43378 593 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 RAB27AP51159 221 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 VCPP55072 806 aaKnown RBP9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 WNT7BP56706 349 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 PDCLQ13371 301 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 XRCC4Q13426 336 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 DSG2Q14126 1118 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 MFSD10Q14728 455 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 UAP1Q16222 522 aaPredicted RBP9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 TTMPQ5BVD1 217 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 EFHC1Q5JVL4 640 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 EEF1DP3Q658K8 133 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 HIBCHQ6NVY1 386 aaPredicted RBP9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 TTC27Q6P3X3 843 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 C17orf99Q6UX52 265 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 CENPUQ71F23 418 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 GSTA5Q7RTV2 222 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 XYLT1Q86Y38 959 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 GSPT2Q8IYD1 628 aaKnown RBP9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 WDTC1Q8N5D0 677 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 ALLCQ8N6M5 410 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 COPS5Q92905 334 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 GDAP1L1Q96MZ0 367 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 MCEEQ96PE7 176 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 SLC4A5Q9BY07 1137 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 ACP6Q9NPH0 428 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 ST7Q9NRC1 585 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 ZHX1Q9UKY1 873 aaPredicted RBP9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 TPX2Q9ULW0 747 aaKnown RBP9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 ZNF148Q9UQR1 794 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 RAD54BQ9Y620 910 aa9.16□□□□□ -0.94
SNRNP40-202ENST00000373720 A0A087WUV0 522 aaPredicted RBP9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 GMNCA6NCL1 334 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 E7EVH7 732 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 PIRO00625 290 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 DNALI1O14645 258 aaPredicted RBP9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 DYNC1LI2O43237 492 aaPredicted RBP9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 B4GALT5O43286 388 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 PRPSAP2O60256 369 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 CABYRO75952 493 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 MICAL2O94851 1124 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 KRT1P04264 644 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 NFICP08651 508 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 IQCF3P0C7M6 154 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 ZNF865P0CJ78 1059 aaPredicted RBP9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 KDELR1P24390 212 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 BRD2P25440 801 aaKnown RBP9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 IVDP26440 423 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 KLRC2P26717 231 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 HOXA11P31270 313 aaPredicted RBP9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 LSP1P33241 339 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 SSR1P43307 286 aaKnown RBP9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 MMP13P45452 471 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 MARCKSL1P49006 195 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 TAF6P49848 677 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 BCAT1P54687 386 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 GNGT1P63211 74 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 IGBP1P78318 339 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 SLC29A2Q14542 456 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 PTPN20Q4JDL3 420 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 FBXO47Q5MNV8 452 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 ZFYVE27Q5T4F4 411 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 MFSD14CQ5VZR4 134 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 TLK2Q86UE8 772 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 ANKRD52Q8NB46 1076 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 SLC35B2Q8TB61 432 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 BCAS4Q8TDM0 211 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 LRRC39Q96DD0 335 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 CCDC114Q96M63 670 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 SLC9A7Q96T83 725 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 ZNF670Q9BS34 389 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 TRIM51Q9BSJ1 452 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 NSRP1Q9H0G5 558 aaKnown RBP9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 SSU72Q9NP77 194 aaKnown RBP9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 LGALS13Q9UHV8 139 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 SLC12A6Q9UHW9 1150 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 SLC24A2Q9UI40 661 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 VPS9D1Q9Y2B5 631 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 NR2E1Q9Y466 385 aa9.15□□□□□ -0.94
SNRNP40-202ENST00000373720 M0QYV0 167 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 NDUFAB1O14561 156 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms