RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 RRM1P23921 792 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 GNL1P36915 607 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-203ENST00000372407 FAXCQ5TGI0 409 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 MEI1Q5TIA1 1274 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 LINC00523Q86TU6 105 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 TMC2Q8TDI7 906 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 INPP5DQ92835 1189 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 CCT7Q99832 543 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 KATNAL1Q9BW62 490 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 F8VZ95 297 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 CYBBP04839 570 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 GOLGA7BQ2TAP0 167 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 TFB1MQ8WVM0 346 aaKnown RBP11.87□□□□□ -0.51
PTPRF-203ENST00000372407 MAGEB18Q96M61 343 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 ZNF518BQ9C0D4 1074 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 OSGEPQ9NPF4 335 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 DDX28Q9NUL7 540 aaKnown RBP11.87□□□□□ -0.51
PTPRF-203ENST00000372407 TBC1D23Q9NUY8 699 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 PKP3Q9Y446 797 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 SLIT2O94813 1529 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 E2F8A0AVK6 867 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 TRPC5OSA6NMA1 111 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 PJA2O43164 708 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 TADA2AO75478 443 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 ANXA9O76027 345 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 ITGB3P05106 788 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 ICAM1P05362 532 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 GLI1P08151 1106 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 SERPINB3P29508 390 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 PNPLA4P41247 253 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 IL31Q6EBC2 164 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 ZNF720Q7Z2F6 126 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 TMCO5AQ8N6Q1 288 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 ACSF2Q96CM8 615 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-203ENST00000372407 HIC2Q96JB3 615 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 CAMKK2Q96RR4 588 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 MYOZ2Q9NPC6 264 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 GPRC5CQ9NQ84 441 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 ATRNO75882 1429 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 LOC102724159A0A0B4J2E5 919 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 H3BQF6 201 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 O00370 1275 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 TBC1D4O60343 1298 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 PROSCO94903 275 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 C6orf222P0C671 652 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-203ENST00000372407 FAM200BP0CF97 657 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 HOXD10P28358 340 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 SCTRP47872 440 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 CYLC2Q14093 348 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-203ENST00000372407 PWP2Q15269 919 aaKnown RBP11.87□□□□□ -0.51
PTPRF-203ENST00000372407 CCDC85BQ15834 202 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-203ENST00000372407 CCNG2Q16589 344 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 DENND1BQ6P3S1 775 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 LAYNQ6UX15 382 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 RFWD2Q8NHY2 731 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 TEKT4Q8WW24 435 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 CYGBQ8WWM9 190 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 MTMR8Q96EF0 704 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 TMEM39BQ9GZU3 492 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 RAB21Q9UL25 225 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 ZBTB39O15060 712 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 FKBP9O95302 570 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 NCAM1P13591 858 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 TGM2P21980 687 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 KCNK10P57789 538 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 RCN1Q15293 331 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 WLSQ5T9L3 541 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 FKBP9P1Q75LS8 142 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 SAMD7Q7Z3H4 446 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 FBXO36Q8NEA4 188 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 EXD1Q8NHP7 514 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 NEUROG2Q9H2A3 272 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 DCLRE1BQ9H816 532 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 DYRK4Q9NR20 520 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.87□□□□□ -0.51
PTPRF-203ENST00000372407 PDP2Q9P2J9 529 aa11.87□□□□□ -0.51
PTPRF-203ENST00000372407 LSM7Q9UK45 103 aaKnown RBP11.87□□□□□ -0.51
PTPRF-203ENST00000372407 DGKIO75912 1065 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 HMBSP08397 361 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 ITGA4P13612 1032 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 NPTX2P47972 431 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 TAF6P49848 677 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 KCNMA1Q12791 1236 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 KPNB1Q14974 876 aaKnown RBP11.86□□□□□ -0.51
PTPRF-203ENST00000372407 C2CD6Q53TS8 623 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 PTRHD1Q6GMV3 140 aaKnown RBP11.86□□□□□ -0.51
PTPRF-203ENST00000372407 SGF29Q96ES7 293 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 ZNF512Q96ME7 567 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-203ENST00000372407 ANKZF1Q9H8Y5 726 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 OLFML3Q9NRN5 406 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 CD274Q9NZQ7 290 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 SLC24A2Q9UI40 661 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 BCL9LQ86UU0 1499 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 RPS6KA5O75582 802 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 CTSHP09668 335 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 UBTFL6P0CB48 400 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-203ENST00000372407 OTUD4Q01804 1114 aaKnown RBP11.86□□□□□ -0.51
PTPRF-203ENST00000372407 KBTBD12Q3ZCT8 623 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 GLB1LQ6UWU2 654 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 DCP1BQ8IZD4 617 aaKnown RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms