RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 POLD3Q15054 466 aaPredicted RBP17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 CINPQ9BW66 212 aaPredicted RBP17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 TNFSF13BQ9Y275 285 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 NVLO15381 856 aaKnown RBP17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 RTN3O95197 1032 aaPredicted RBP17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 RALBP11234 206 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 CYP11B1P15538 503 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 IRX4P78413 519 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 SF3A3Q12874 501 aaKnown RBP eCLIP17.11■□□□□ 0.333e-6■■■■■ 28.1
SMARCA4-201ENST00000344626 USP41Q3LFD5 358 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 UNC45BQ8IWX7 931 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 CARNMT1Q8N4J0 409 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 PPM1NQ8N819 430 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 RRN3Q9NYV6 651 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 SPG21Q9NZD8 308 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 PAK5Q9P286 719 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 SLC25A13Q9UJS0 675 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 PTPRZ1P23471 2315 aaPredicted RBP17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 SNHG28P0DPA3 235 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 CCND3P30281 292 aaPredicted RBP17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 FBXO46Q6PJ61 603 aaPredicted RBP17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 ZBED8Q8IZ13 594 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 ULK4Q96C45 1275 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 FIS1Q9Y3D6 152 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 SLC12A1Q13621 1099 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 SLC24A5Q71RS6 500 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 AGAP3Q96P47 875 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 NUF2Q9BZD4 464 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 VPS11Q9H270 941 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 CHST12Q9NRB3 414 aa17.11■□□□□ 0.33
SMARCA4-201ENST00000344626 SGPL1O95470 568 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 COPS2P61201 443 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 ITGB3BPQ13352 177 aaPredicted RBP17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 SMAD1Q15797 465 aaKnown RBP17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 PREPLQ4J6C6 727 aaPredicted RBP17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 SMARCD1Q96GM5 515 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 EGFL8Q99944 293 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 OSBPL8Q9BZF1 889 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 ELOVL4Q9GZR5 314 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 VCX3BQ9H321 246 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 TSR3Q9UJK0 312 aaKnown RBP17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 COMTP21964 271 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 PMS2P54278 862 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 CCDC85BQ15834 202 aaPredicted RBP17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 LRRC43Q8N309 656 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 SEZ6LQ9BYH1 1024 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 C10orf71Q711Q0 1435 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 HSPA4LO95757 839 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 GYPCP04921 128 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 SPATA31D3P0C874 917 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 CD44P16070 742 aaKnown RBP17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 KLK7P49862 253 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 GABPB1Q06547 395 aaPredicted RBP17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 HIF1AQ16665 826 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 FIGNQ5HY92 759 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 SH3D19Q5HYK7 790 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 SPATA31D4Q6ZUB0 917 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 HMGB1P1B2RPK0 211 aaPredicted RBP17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 CFAP99D6REC4 459 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 PHF2O75151 1096 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 TMCC1O94876 653 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 ASS1P00966 412 aaKnown RBP17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 ACADMP11310 421 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 GZMAP12544 262 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 SNX12Q9UMY4 172 aa17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 NOVA2Q9UNW9 492 aaKnown RBP17.1■□□□□ 0.33
SMARCA4-201ENST00000344626 CALRP27797 417 aaKnown RBP17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 C1orf186Q6ZWK4 172 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 ZNF384Q8TF68 577 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 FOPNLQ96NB1 174 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 TSPAN18Q96SJ8 248 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 ZBTB18Q99592 522 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 SMIM35A0A1B0GVV1 85 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 PDK2Q15119 407 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 TBC1D19Q8N5T2 526 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 LTBP4Q8N2S1 1624 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 ZNF197O14709 1029 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 SCAMP3O14828 347 aaKnown RBP17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 YWHAQP27348 245 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 UGP2Q16851 508 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 SYTL3Q4VX76 610 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 PSRC1Q6PGN9 363 aaPredicted RBP17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 ZDHHC17Q8IUH5 632 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 PSTPIP1O43586 416 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 BDNFP23560 247 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 TKTL1P51854 596 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 NNTQ13423 1086 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 TMTC4Q5T4D3 741 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 NPLOC4Q8TAT6 608 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 SPATA18Q8TC71 538 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 FRMD8P1Q9BZ68 369 aaPredicted RBP17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 FAM96AQ9H5X1 160 aa17.09■□□□□ 0.33
SMARCA4-201ENST00000344626 SDK1Q7Z5N4 2213 aa17.08■□□□□ 0.33
SMARCA4-201ENST00000344626 CTIFO43310 598 aaKnown RBP17.08■□□□□ 0.33
SMARCA4-201ENST00000344626 ATP1A1P05023 1023 aaKnown RBP17.08■□□□□ 0.33
SMARCA4-201ENST00000344626 CENPCQ03188 943 aa17.08■□□□□ 0.33
SMARCA4-201ENST00000344626 CAPSQ13938 189 aa17.08■□□□□ 0.33
SMARCA4-201ENST00000344626 MTF1Q14872 753 aa17.08■□□□□ 0.33
SMARCA4-201ENST00000344626 ASAH2Q9NR71 780 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms