RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 FBXO38Q6PIJ6 1188 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 C16orf89Q6UX73 402 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 CRELD2Q6UXH1 353 aaPredicted RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MARCH10Q8NA82 808 aaPredicted RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 RFWD2Q8NHY2 731 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 FAM45AQ8TCE6 357 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MLPHQ9BV36 600 aaPredicted RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SLC26A6Q9BXS9 759 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MUC13Q9H3R2 512 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 TJP2Q9UDY2 1190 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 CIDEBQ9UHD4 219 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 PA2G4Q9UQ80 394 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 STON1Q9Y6Q2 735 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 A8MXQ7 604 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 H3BM21 787 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 H7C1W4 665 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF75DP51815 510 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 FKBP1AP62942 108 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 DMTNQ08495 405 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 DNAJC3Q13217 504 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 NCF4Q15080 339 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 UGT3A1Q6NUS8 523 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MTSS1LQ765P7 747 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 TAS1R3Q7RTX0 852 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 ATP11CQ8NB49 1132 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SH3GL2Q99962 352 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 OSBPL3Q9H4L5 887 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 KLHL31Q9H511 634 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 TDRD3Q9H7E2 651 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 FBXO28Q9NVF7 368 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MAGED2Q9UNF1 606 aaPredicted RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 RRP15Q9Y3B9 282 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SPACA6W5XKT8 324 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 CCDC88CQ9P219 2028 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 GTPBP10A4D1E9 387 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 EVPLLA8MZ36 301 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 RXRAP19793 462 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 LIFRP42702 1097 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 STK3Q13188 491 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 PTGISQ16647 500 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 MAN2A1Q16706 1144 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 ME3Q16798 604 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 LRRC36Q1X8D7 754 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 RABEPKQ7Z6M1 372 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 JAMLQ86YT9 394 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 SVOPQ8N4V2 548 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF398Q8TD17 642 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 DIS3LQ8TF46 1054 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 CDK5RAP1Q96SZ6 601 aaKnown RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF577Q9BSK1 485 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 C11orf84Q9BUA3 381 aaPredicted RBP3.42□□□□□ -1.86
CSMD3-202ENST00000339701 AP1M1Q9BXS5 423 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 PARVGQ9HBI0 331 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF302Q9NR11 478 aa3.42□□□□□ -1.86
CSMD3-202ENST00000339701 QSOX1O00391 747 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CD3EAPO15446 510 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ENTPD5O75356 428 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ADH1AP07327 375 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CYP2C8P10632 490 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CYP19A1P11511 503 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 HMGCS2P54868 508 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 GEMIN4P57678 1058 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 PTPRNQ16849 979 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 TTC27Q6P3X3 843 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RD3Q7Z3Z2 195 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 KLHL7Q8IXQ5 586 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 KRT78Q8N1N4 520 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF555Q8NEP9 628 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ASAP3Q8TDY4 903 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 GPKOWQ92917 476 aaPredicted RBP eCLIP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RMDN3Q96TC7 470 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 GAD1Q99259 594 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 POLMQ9NP87 494 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 UXTQ9UBK9 157 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 GABBR1Q9UBS5 961 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 FAM32AQ9Y421 112 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 MED26O95402 600 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 IL12AP29459 219 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 IFNGR2P38484 337 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ART3Q13508 389 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 MTMR2Q13614 643 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 INSCQ1MX18 579 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 TMEM44Q2T9K0 475 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 PMF1Q6P1K2 205 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CHMP1BQ7LBR1 199 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ZC3HC1Q86WB0 502 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 KBTBD3Q8NAB2 608 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 S100ZQ8WXG8 99 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RIN2Q8WYP3 895 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CENPOQ9BU64 300 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 LSG1Q9H089 658 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 HIPK3Q9H422 1215 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RGL1Q9NZL6 768 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 PRELID1Q9Y255 219 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 FAM47DPA6NHR8 397 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CFAP99D6REC4 459 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CCL5P13501 91 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ARPC4P59998 168 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CSNK2BP67870 215 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 MAD2L1Q13257 205 aaPredicted RBP3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms