RNA–Protein interactions for RNA: ENST00000321356.8

CLK1-201, Transcript of CDC like kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK1, Length 1,888 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-201ENST00000321356 PSMA2P25787 234 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 PTPN4P29074 926 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 EPHB2P29323 1055 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 PSMC4P43686 418 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 YWHAEP62258 255 aaKnown RBP9.13□□□□□ -0.95
CLK1-201ENST00000321356 SURF1Q15526 300 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 STXBP2Q15833 593 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 DUOXA2Q1HG44 320 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 ZNF394Q53GI3 561 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 TAF1BQ53T94 588 aaPredicted RBP9.13□□□□□ -0.95
CLK1-201ENST00000321356 FYB2Q5VWT5 728 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 CDCA2Q69YH5 1023 aaPredicted RBP9.13□□□□□ -0.95
CLK1-201ENST00000321356 DENND1BQ6P3S1 775 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 C3orf62Q6ZUJ4 267 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 CHSY1Q86X52 802 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 RHPN2Q8IUC4 686 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 KIAA0319LQ8IZA0 1049 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 FBXO36Q8NEA4 188 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 CFAP61Q8NHU2 1237 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 JOSD2Q8TAC2 188 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 TCP10LQ8TDR4 215 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 MRRFQ96E11 262 aaKnown RBP9.13□□□□□ -0.95
CLK1-201ENST00000321356 ACO2Q99798 780 aaKnown RBP9.13□□□□□ -0.95
CLK1-201ENST00000321356 MRPL4Q9BYD3 311 aaKnown RBP9.13□□□□□ -0.95
CLK1-201ENST00000321356 AS3MTQ9HBK9 375 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 CYTH4Q9UIA0 394 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 CPSF3Q9UKF6 684 aaKnown RBP9.13□□□□□ -0.95
CLK1-201ENST00000321356 AGTPBP1Q9UPW5 1226 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 LRRC42Q9Y546 428 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 CEP83Q9Y592 693 aa9.13□□□□□ -0.95
CLK1-201ENST00000321356 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.12□□□□□ -0.95
CLK1-201ENST00000321356 APOC4-APOC2K7ER74 178 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 IL1BP01584 269 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 APOC2P02655 101 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 WEE2P0C1S8 567 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 KRT3P12035 628 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 PTPRAP18433 802 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 RXRBP28702 533 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 POLR2BP30876 1174 aaKnown RBP9.12□□□□□ -0.95
CLK1-201ENST00000321356 ETV4P43268 484 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 HMGCS2P54868 508 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 DYNLT1P63172 113 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 RNASELQ05823 741 aaKnown RBP9.12□□□□□ -0.95
CLK1-201ENST00000321356 BLMHQ13867 455 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 HADHQ16836 314 aaKnown RBP9.12□□□□□ -0.95
CLK1-201ENST00000321356 SMTNL2Q2TAL5 461 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 NBPF12Q5TAG4 269 aaPredicted RBP9.12□□□□□ -0.95
CLK1-201ENST00000321356 ZNF449Q6P9G9 518 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 CATSPERGQ6ZRH7 1159 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 SH2D5Q6ZV89 423 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 LONP2Q86WA8 852 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 UNC45BQ8IWX7 931 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 KIRREL3Q8IZU9 778 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 PDIK1LQ8N165 341 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 DNERQ8NFT8 737 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 CMASQ8NFW8 434 aaPredicted RBP9.12□□□□□ -0.95
CLK1-201ENST00000321356 FAXDC2Q96IV6 333 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 ADAM33Q9BZ11 813 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 C10orf88Q9H8K7 445 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 ZWILCHQ9H900 591 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 NPHS2Q9NP85 383 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 SLC17A7Q9P2U7 560 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 TJP2Q9UDY2 1190 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 ZFP69BQ9UJL9 534 aa9.12□□□□□ -0.95
CLK1-201ENST00000321356 A0A0G2JMZ2 1700 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 LRRC37A2A6NM11 1700 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 DNAJC6O75061 913 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 SMNDC1O75940 238 aaKnown RBP eCLIP9.11□□□□□ -0.95
CLK1-201ENST00000321356 FAM155BO75949 473 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 FARP2O94887 1054 aaPredicted RBP9.11□□□□□ -0.95
CLK1-201ENST00000321356 LUC7L3O95232 432 aaKnown RBP9.11□□□□□ -0.95
CLK1-201ENST00000321356 TGDSO95455 350 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 CD48P09326 243 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 DPEP1P16444 411 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 UBA1P22314 1058 aaKnown RBP9.11□□□□□ -0.95
CLK1-201ENST00000321356 PROZP22891 400 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 ABL2P42684 1182 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 NEK3P51956 506 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 SLC18A2Q05940 514 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 FSTL1Q12841 308 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 ZNF699Q32M78 642 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 KCNT1Q5JUK3 1230 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 SCARA5Q6ZMJ2 495 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 ZBTB33Q86T24 672 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 MTDHQ86UE4 582 aaKnown RBP9.11□□□□□ -0.95
CLK1-201ENST00000321356 XYLT1Q86Y38 959 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 RFWD2Q8NHY2 731 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 SLC44A1Q8WWI5 657 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 PRPF31Q8WWY3 499 aaKnown RBP9.11□□□□□ -0.95
CLK1-201ENST00000321356 RSAD2Q8WXG1 361 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 PTPRN2Q92932 1015 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 PTCD3Q96EY7 689 aaKnown RBP9.11□□□□□ -0.95
CLK1-201ENST00000321356 NUDCD1Q96RS6 583 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 CYTH2Q99418 400 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 MIPEPQ99797 713 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 DENND2DQ9H6A0 471 aaPredicted RBP9.11□□□□□ -0.95
CLK1-201ENST00000321356 MANSC1Q9H8J5 431 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 NRBP2Q9NSY0 501 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 WDR35Q9P2L0 1181 aa9.11□□□□□ -0.95
CLK1-201ENST00000321356 PPME1Q9Y570 386 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms